Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0342 ATGGAGGACTATACCACCACCACTAAGGCCTACAATCTCTTCGTGAAGCTCTTGGACGGAAAAACCCTAACCCTAAAATTCCCATCTCCTATTCTTTACGCCAATTCCATAAAGGATCGCATTTTCGAGGTTACCAGAATCCCCACACAGCATCAGCGCCTTGTTACTGGCGTCCAAGACCTCAGCGGTAACGAATCTGTTATCTCCTGCTCGTCGGAAGGCGGGGATGTGTTCCCCACCGTGCATCTGCTGTTGCGGCTCGCTGGTGGCAAGGGAGGGTTTGGATCGCTTTTGCGTGGTGCGGCCACGAAGGCTGGGCAGAAAAAGACGAACAACTTTGAGGCTTGCAGGGATATGAGTGGCCGAAGGTTGAGGCACGTAAACGCAGAGAAGAGATTGGAGGAATGGAAGGCCGGGGAGGCGGAGAGGAAGCTGGAGAAGATTGCGGAAGAGTTTTTGAAGAAGCAGGCGAAGAAGGGTAAGAAGGGTATGGGTGATGGCGAGGCGCACAAGTATGTGGCAAAATATAGGGAGGAGTCTGAGCGTTGCACTGCCGAGGTTGCCGAGTCGGTGAAGGAGGCTTTGATGTCTATCAATGGCAAGAGAAAGGTTTCAGATTTTGGAAAAGGCAGAGCAGATGCAAAGAAGATGAAGATATGGATGGGAAAGAGGACATTAAATGAAAGTGATAGTGATGATTCTGATGAGGGTGTGAGCGATGATGGAGAAAATGATAAATCAACTGTATTGAATAATGGGAATGACTCAGACTCAAATAAGGCTGAAGGCAGTTCAGGTTCAGTAACTGGTGGGCAACAGGATGGTGAATATTCTGTGGCTGGCTCGAGTGGAAGTTGCTCTGAAGAAGAGAAAGAGGCTGTTCTAGAAGGAAAAATAGACCCTAGCAAATATCTTAACAGTGAATCTCTCCAGAACATAACGGGCAAACTGGTTGAACCTGTGATTTGTGATAAGATGGCAAATGGTGTCATTATGCCTGTTTTGGACTCTGCAGCTTTGGGAATTGATGCTGAAGAAGATGGGAAGCAGGACTCCAGTGAAGCTGGCAGGCTTGATTCAGCAGTCACTCAAGCCACAAATCTTATAGGCTCACAGCATGTGGTGGATGCGAACAAGTCAAACGATATTGAAACCAATGGATTGCGTGAGCATAAAGCTTCATCTCATGAAGAAACTCACACAAATGCCAGTGCTCAGGAAATAGAGGAGCCTTTGAATTTTGATGCATTTAATTCAGCTGCAGAACTCGAGATTCTTGGCCTGGAAAGGTTGAAGTCGGAGCTGCAGGCACGCGGGTTAAAATGTGGAGGCACATTGCAGGAGCGTGCTGCTAGGCTTTTCCTTCTAAAGTCGACTCCACTGGATAAACTTCCCAAAAAGTTGCTTGCCAAGAAATGA 1419 0.4757 MEDYTTTTKAYNLFVKLLDGKTLTLKFPSPILYANSIKDRIFEVTRIPTQHQRLVTGVQDLSGNESVISCSSEGGDVFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFEACRDMSGRRLRHVNAEKRLEEWKAGEAERKLEKIAEEFLKKQAKKGKKGMGDGEAHKYVAKYREESERCTAEVAESVKEALMSINGKRKVSDFGKGRADAKKMKIWMGKRTLNESDSDDSDEGVSDDGENDKSTVLNNGNDSDSNKAEGSSGSVTGGQQDGEYSVAGSSGSCSEEEKEAVLEGKIDPSKYLNSESLQNITGKLVEPVICDKMANGVIMPVLDSAALGIDAEEDGKQDSSEAGRLDSAVTQATNLIGSQHVVDANKSNDIETNGLREHKASSHEETHTNASAQEIEEPLNFDAFNSAAELEILGLERLKSELQARGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0342 472 Pfam Replication stress response SDE2 C-terminal 397 471 IPR025086 -
Prci13g0342 472 Gene3D - 3 92 - -
Prci13g0342 472 PANTHER SPLICING FACTOR SF3A-RELATED 12 471 - -
Prci13g0342 472 SUPERFAMILY Ubiquitin-like 11 91 IPR029071 -
Prci13g0342 472 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 161 IPR024974 -
Prci13g0342 472 MobiDBLite consensus disorder prediction 244 285 - -
Prci13g0342 472 MobiDBLite consensus disorder prediction 225 294 - -
Prci13g0342 472 Coils Coil 138 158 - -
Prci13g0342 472 Coils Coil 418 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0342 Prci-Chr13 2430719 2434093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0342 412 471 C2H2 Transcription Factor Family AT5G06160 51.667 2.75e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0342 K25059 - gmx:100781694 474.937