Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0306 ATGAAGCAAACTAAGACAATCACAACCAAGTTTGTGAAACCAGAGTTTCTTATCGGAGCCCCCAGGGTTGTCCGGATCAGCGTCACTGATCACTACGCCACTGACACCTCAAGCGGCGATGACGAAGACGAACGCTTCCAACCCAGGAGAATGAGGAGGCTCGTTAATGAAATCAGAATAGATAAATGCTCCAATTTTTCGGCAAACAGAGAGGCTCACGGAGGAGGTACCAACACCTCGTCTTCGAAGCAGAGGTCCAGAAACAAGTCCGGTAAGGTCCGACCCGAAAAATCTGACCAGGTCGAACCGTACAGAAAGAAGTACATCGGAGTTCGACGGCGGGAATGGGGGCGGTACTCGGCGGAGATCAGAGATCCTGTGAGTCGGCAGAGGCTGTGGCTGGGCACTTTCGATACGGCGGAAGAGGCAGCTCTGGCATACGACAGAGCAGCTATTCGTATTCGAGGTCCATATGCCAAGACAAATATTCTCCGACCACCACCTCTAATTGCCGAACCCGTCGAAGAATCCGAAGCAACCTCAGTGGACAACGTTGAGTTGATTAAGGAGCCCCACGCGTCTTCCCCAACCTCTGTCCTGAGGTTCCAGTCTCTAGAAGAACCCAAAACAGAGCCCGGAGAAGGAGAAGCAGATGCAGAAGCAGAAGCGGAGCCATATTTCCAAGATAGTAATTTATTGTTCTTAGATTCTTCATTTGCTTCTCGATATTCAGAATATGAGGTCCCTCTCCCAATGTTCTTCGACCAGTTCACTTCAAACGATAATTTAAATATCAGGGACAGTCCGTTCCACCTAGAACAAGATTTTGAATCGTGTAAATGGGACGTAGACAGCTACTTTCAAGAACAAGACAGTACTGAAAACTGGGTTGGAGACGGACAACAAAATCATCCGAAGGCGAAGGTAATCGGGGAAGATTGA 942 0.4883 MKQTKTITTKFVKPEFLIGAPRVVRISVTDHYATDTSSGDDEDERFQPRRMRRLVNEIRIDKCSNFSANREAHGGGTNTSSSKQRSRNKSGKVRPEKSDQVEPYRKKYIGVRRREWGRYSAEIRDPVSRQRLWLGTFDTAEEAALAYDRAAIRIRGPYAKTNILRPPPLIAEPVEESEATSVDNVELIKEPHASSPTSVLRFQSLEEPKTEPGEGEADAEAEAEPYFQDSNLLFLDSSFASRYSEYEVPLPMFFDQFTSNDNLNIRDSPFHLEQDFESCKWDVDSYFQEQDSTENWVGDGQQNHPKAKVIGED 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0306 313 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Prci13g0306 313 SMART rav1_2 107 174 IPR001471 GO:0003700|GO:0006355
Prci13g0306 313 CDD AP2 106 162 IPR001471 GO:0003700|GO:0006355
Prci13g0306 313 MobiDBLite consensus disorder prediction 70 86 - -
Prci13g0306 313 MobiDBLite consensus disorder prediction 292 313 - -
Prci13g0306 313 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Prci13g0306 313 MobiDBLite consensus disorder prediction 89 104 - -
Prci13g0306 313 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Prci13g0306 313 MobiDBLite consensus disorder prediction 193 220 - -
Prci13g0306 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 236 - -
Prci13g0306 313 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Prci13g0306 313 MobiDBLite consensus disorder prediction 65 104 - -
Prci13g0306 313 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Prci13g0306 313 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Prci13g0306 313 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0306 Prci-Chr13 1989394 1990335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0306 19 290 AP2-EREBP Transcription Factor Family AT2G46310 37.919 3.68e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g0306 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0306 - - pcin:129290903 611.683