Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0228 ATGGTGTCCGTGAACCCAAATCCAGCTCAAGGTTTTTACTTCTTCGATCCCATGAATACGGGCCTTCCCGGTCTCAATCGCCCTGTGCCGCCCCCGACGGCGACTTCGGCCGTTGCCTATACGCCGCCGTATGCGGATGATCCGAATAAGAAGATCCGAAAACCGTATACTATTACTAAGTCCAGAGAGAACTGGTCCGAGCAGGAGCACGACAAATTTCTCGAAGCTCTCCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTAAAAGTTCAGAAGAATGGCACTAGTGAACATGTGCCTCCTCCCCGACCAAAGAGAAAAGCTGCTCATCCTTATCCACAAAAGGCCCCTAAAAATGCTGCATTGGCATCTCAAGGTATCGGACCAATGCAATCATCATCTGCTTTTGCTGAGCCTGCATGCATTTATAGACCAGATTCATCATCCGTGCTCGGAACACCAGTTACCAATGTGCCTTTGTCATCTTTGAACTGCAATGCTATGCCGCCTGTCAGCATGCCACAAGTGGCTAAAGATGATATGGGATTGGCTGGACAAGCTGTTCCTCGTAATTGTTGCTATAGCAGTAGTAATGAGAGCACTCCTGGTGTTTGGCCCGATAATAGAAGTATAGATCAAGCAGACCAAGGCAAGCCAGTAACTGTAATGCCAGATTTTGCACGAATCTATAAGTTCATCGGTAGTGTGTTTGATCCAAATGCAACGGATCATCTGCAGAGACTGAAAAAGATGGACCCAATAAATGTGGAAATAGTATTGCTGTTGATGAGAAACCTCACCATCAATTTAACGAGTCCTAAGTTTAAGGACCATAAGTTGCTTTCGTTGTATGATGTGGATGTCGGGAAGTTGAAGACTGGTAGTCTTCGCAGCAATCCCATGTCCAACAAATCTGAAAGTACTGTTCTGTCTGCTTAG 999 0.4515 MVSVNPNPAQGFYFFDPMNTGLPGLNRPVPPPTATSAVAYTPPYADDPNKKIRKPYTITKSRENWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAALASQGIGPMQSSSAFAEPACIYRPDSSSVLGTPVTNVPLSSLNCNAMPPVSMPQVAKDDMGLAGQAVPRNCCYSSSNESTPGVWPDNRSIDQADQGKPVTVMPDFARIYKFIGSVFDPNATDHLQRLKKMDPINVEIVLLLMRNLTINLTSPKFKDHKLLSLYDVDVGKLKTGSLRSNPMSNKSESTVLSA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0228 332 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Prci13g0228 332 SMART sant 61 109 IPR001005 -
Prci13g0228 332 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Prci13g0228 332 ProSiteProfiles SANT domain profile. 60 113 IPR017884 -
Prci13g0228 332 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Prci13g0228 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Prci13g0228 332 PANTHER SWI/SNF COMPLEX-RELATED 45 291 - -
Prci13g0228 332 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Prci13g0228 332 Gene3D - 64 112 - -
Prci13g0228 332 MobiDBLite consensus disorder prediction 111 140 - -
Prci13g0228 332 CDD SANT 64 107 IPR001005 -
Prci13g0228 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0228 Prci-Chr13 1519089 1523428 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci13g0228 Myb_DNA-binding 7.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0228 - - gmx:778090 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0228 13 1519089 1523428 Prci13g0228 13 1519089 1523428 ECH