Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0227 ATGGTGTCCGTGAACCCAAATCCAGCTCAAGGTTTTTACTTCTTCGATCCCATGAATACGGGCCTTCCCGGTCTCAATCGCCCTGTGCCGCCCCCGACGGCGACTTCGGCCGTTGCCTATACGCCGCCGTATGCGGATGATCCGAATAAGAAGATCCGAAAACCGTATACTATTACTAAGTCCAGAGAGAACTGGTCCGAGCAGGAGCACGACAAATTTCTCGAAGCTCTCCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTAAAAGTTCAGAAGAATGGCACTAGTGAACATGTGCCTCCTCCCCGACCAAAGAGAAAAGCTGCTCATCCTTATCCACAAAAGGCCCCTAAAAATGCTGCATTGGCATCTCAAGGTATCGGACCAATGCAATCATCATCTGCTTTTGCTGAGCCTGCATGCATTTATAGACCAGATTCATCATCCGTGCTCGGAACACCAGTTACCAATGTGCCTTTGTCATCTTTGAACTGCAATGCTATGCCGCCTGTCAGCATGCCACAAGTGGCTAAAGTAATGCCAGATTTTGCACGAATCTATAAGTTCATCGGTAGTGTGTTTGATCCAAATGCAACGGATCATCTGCAGAGACTGAAAAAGATGGACCCAATAAATGTGGAAATAGTATTGCTGTTGATGAGAAACCTCACCATCAATTTAACGAGTCCTAAGTTTAAGGACCATCAGAAGTTGCTTTCGTTGTATGATGTGGATGTCGGGAAGTTGAAGACTGGTAGTCTTCGCAGCAATCCCATGTCCAACAAATCTGAAAGTACTGTTCTGTCTGCTTAG 873 0.4525 MVSVNPNPAQGFYFFDPMNTGLPGLNRPVPPPTATSAVAYTPPYADDPNKKIRKPYTITKSRENWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAALASQGIGPMQSSSAFAEPACIYRPDSSSVLGTPVTNVPLSSLNCNAMPPVSMPQVAKVMPDFARIYKFIGSVFDPNATDHLQRLKKMDPINVEIVLLLMRNLTINLTSPKFKDHQKLLSLYDVDVGKLKTGSLRSNPMSNKSESTVLSA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0227 290 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Prci13g0227 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Prci13g0227 290 SMART sant 61 109 IPR001005 -
Prci13g0227 290 ProSiteProfiles SANT domain profile. 60 113 IPR017884 -
Prci13g0227 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Prci13g0227 290 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Prci13g0227 290 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Prci13g0227 290 CDD SANT 64 107 IPR001005 -
Prci13g0227 290 PANTHER SWI/SNF COMPLEX-RELATED 45 248 - -
Prci13g0227 290 MobiDBLite consensus disorder prediction 111 139 - -
Prci13g0227 290 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Prci13g0227 290 Gene3D - 64 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0227 Prci-Chr13 1519089 1523428 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci13g0227 Myb_DNA-binding 6.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0227 - - gmx:778090 386.341