Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0200 ATGCTTGATAATGGGAAATCAGTGGATTTGTATAAGCTCTTCAAGGTTGTTAAGGAGAACGGTGGGTATGATGCGGTCTCCAAAAACCGTTTATGGGATCTGGTGGGTGAACAATCTGGGTTGGGTACGAGCATTGGTTCATTTGTGCAACTGATTTACAATAAGTACTTGATTACTTTAGAGTTATGGCTAAAGCAAGCTGCTGATGATAAGGTCTCTGACTGTAGTCTGGAGTTTAACAGAGTTGATTTTGGCAGGCATTTGATGGAGTTGCACGCAGAATTTGAGGGGTCCTTGTCGGATTGTACTGATGAAGAGTTGGGAGATGAGATGTGTCGACGTTCTGAGTTTAAAACTGAATATAAACGCCAGGATGGTGAGGTGTTGTTCGATTCTAAGGGATTGAAGAGCAGTTGTGGAGGGGCCAGAAAAGTTCAGCGTGGGGGATTTATTGATTTGAATATACCAGGGTTTGAGTTGAATGAACTCACAACAACAAGAAGAATTGAGTTGAATGAACTCAGTCCAGGAAATTTGTGCATTACGAGTGAGGCAAACAAAATGCCAGGATTACCGGATGGAGGCAAGAGATGTGCCGATGATGATGATGATGATGATGTTTTGGTATTGGACCCATCTGATGTAAATGAAGGGACCTTTAATCGTAAAAGGAAGAGAGAGTCTCATTCTATGCAGCAGGGAATGCTAAGCTGGTTGACTGGCATTGCGAAGAATCCTTGTGATCCTGTTGTTGATTCAATACCTGAAAAATCGAAGTGGAGGTCTCACAGCAATGAGAAGGTCTGGAAGCAGGTTTTGTTGTTTCGGGAGGCTGTTTTTCTAAAGCGACATGCTGAGTCAAGCAGTGAACAGTTGAATTGGCAGAGACAAAAGATGCATCCATCCATGTATGAAGATCACCTTGAGGCAACGTACAATCTTAGGGAGAGATGGAAATGTGCCAAGAAGCTTTTATTTGAAAGATCTATGTCTGTAAGAGTCTCTTCAGATTCATCCGTGGAAACCAAGGGTAATCTGGAGAGAACTTCTAGTCCTCACAATGAAGATTCTGCTGAGAAAAAGCTGCCTGATTCCTCTGCTGCGCTGTCAGGTCTTGACAAATGTGGCATAGTTCCCATCCCTGTGGGGCCAAGTCATCAAGCTATAGTGCCAGTATGGACTGGCATGACTTCTGAAAGTGATTCCAAATGGTTGGGGACCCGAATATGGCCATTAGAGAAAGTAAATCACAGACTCCTGATTGAGAGGGACCCCATTGGCAAGGGAAGACAAGATTCATGTGGCTGCCAAGTAGCGGGTTCTGTCGAATGTGTCAGATTTCACGTAGCTGAGAAAAGGGCTAAGGTTAAGCTGGAATTAGGTGTGGCTTTTTACCTGTGGAATTTAGACAAGGTAGGTGAAGATGTTAGGCAATCCTGGACTGTGGATGAAGAGAAGAAGTTTAAGGATGTGGTGCGATCGAATCCTCCATCACTGGAGAGATACTATTGGGATCATATTTTTAAATCATTTCCCAAGAAGACCAGGGAAGATCTAGTTAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCCGAGGATATCAGAACAGGAATACTCCAAATGAAATTGATAGTGATGATGAAGAATCAGATTTTGGACCTTTGAGGAATTTTTTTGGACAGCAAGCACAGAAGCCTACCAGCTCCATCTTACTAACCCCCAAAAAGTCTCAGACAAAGAACAAATAG 1749 0.4305 MLDNGKSVDLYKLFKVVKENGGYDAVSKNRLWDLVGEQSGLGTSIGSFVQLIYNKYLITLELWLKQAADDKVSDCSLEFNRVDFGRHLMELHAEFEGSLSDCTDEELGDEMCRRSEFKTEYKRQDGEVLFDSKGLKSSCGGARKVQRGGFIDLNIPGFELNELTTTRRIELNELSPGNLCITSEANKMPGLPDGGKRCADDDDDDDVLVLDPSDVNEGTFNRKRKRESHSMQQGMLSWLTGIAKNPCDPVVDSIPEKSKWRSHSNEKVWKQVLLFREAVFLKRHAESSSEQLNWQRQKMHPSMYEDHLEATYNLRERWKCAKKLLFERSMSVRVSSDSSVETKGNLERTSSPHNEDSAEKKLPDSSAALSGLDKCGIVPIPVGPSHQAIVPVWTGMTSESDSKWLGTRIWPLEKVNHRLLIERDPIGKGRQDSCGCQVAGSVECVRFHVAEKRAKVKLELGVAFYLWNLDKVGEDVRQSWTVDEEKKFKDVVRSNPPSLERYYWDHIFKSFPKKTREDLVSYYFNVFLLQRRGYQNRNTPNEIDSDDEESDFGPLRNFFGQQAQKPTSSILLTPKKSQTKNK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0200 582 SMART bright_3 1 66 IPR001606 GO:0003677
Prci13g0200 582 Gene3D - 1 75 IPR036431 GO:0003677
Prci13g0200 582 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Prci13g0200 582 Pfam Myb-like DNA-binding domain 477 526 IPR001005 -
Prci13g0200 582 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Prci13g0200 582 SMART sant 476 529 IPR001005 -
Prci13g0200 582 CDD ARID 4 61 - -
Prci13g0200 582 MobiDBLite consensus disorder prediction 560 582 - -
Prci13g0200 582 MobiDBLite consensus disorder prediction 348 362 - -
Prci13g0200 582 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 579 - -
Prci13g0200 582 SUPERFAMILY ARID-like 4 76 IPR036431 GO:0003677
Prci13g0200 582 MobiDBLite consensus disorder prediction 337 363 - -
Prci13g0200 582 SMART ELM2_2 380 431 IPR000949 -
Prci13g0200 582 MobiDBLite consensus disorder prediction 538 582 - -
Prci13g0200 582 CDD SANT 479 527 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0200 Prci-Chr13 1240043 1245924 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci13g0200 ARID 4.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0200 - - pcin:129291322 1173.3