Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0197 ATGCAATCTACTGGTCCCGGCAGTGGTGGACCCGGCCGGAACCCGGGAGTGGGGCCGGCAGGGCGCGCCGCATCATCAGCTGCTTCCCCATCCTCTTCATCTTCAGCAGTGTCGACGTCGCACTTGGGGTTAGACACTTTACAGCAGCAGCAACACCAGCAGATTGGTTCTAGGCAGTCATTGCAACAACAACTACTTAGAAAACCTGAAGGGAATGAAACATTTTTATCATATCAAGCAGGGCTTCAAGGGGTATATGGTGCTAACAATTTCTCATCTCCCAGTCCTGTACAACTGCCCCAGCAATCACGGAAATCAATTGATTTTGCTCAGCATGGTTCCAGTCAGGAGCCCCAGATCAGGGGTCAAGGCATTGAGCAACAAATGCCTAATCCTATCCATCAAGCATACCTTCAATATGCTCTGCAAGCTGCCCAACAAAAGTCTGCTTTGGCTATGGAATCACAACAGCAAACTAAAATGGGAATGTTAGGCCCTTCAAACATAAAGGATCAAGAAATGCGTATGGGAAACTTGAAAATGCAGGAACTAATTTCCTTGCAGGCAGTTAATCAAACACAATGTTTGACTCCTAGGAATTCATCTGAACAATTCTCTCGTGGGGAAAAGCAGATTGAACAAGGACAGCATCAAGCAACAGATCACAAGATTGAGGGAAAGTCTTCGACCCAGGGACAGGCCATTGGGCACATAATGCCTGGAAATATGACAAGACCCATGCAAGCACCAACAACTCCTCAAGGCATCCAAAATGTTGTGAACAACCAGATGGTGGTATCTGCTCAAATGCATGCTATGCAGGCTTGGGCACATGAACGCAACATTGATCTATCACATCCTGCAAATGCTTACTTAATGGCACGACTCATTCCTATGATGCAGTCAAAGATGGTTTCACAACAAAAGCCAAGTGAGAACAATGTTGCTCCTCAGTCATCACCTGCCCCTGTTTCTAAACAGCAAGTTACTTCTCCAATGGAGAACCCAGCACATGCTAATTCATCAAGTGAATTGTCTGGGCAGTCTGGATGTGCAAAAGTGAGGCAGGTAGTTCCCCCCAGCCACTTCGTTCCACCAACCAATGCTGATACAGCTGGTAGTAGCAGTGATGTTGTGCAACAAATTAACATTCATGGCAGAGAGTCTCAAGCATCTCTGAGGCAACCTGTTACTGTTGGGAATGGATTGCCTCCCATGCATCCCCAACAATTTTCTGCTAACATGAATCTTGGTGCAGACCATTCTTTGAATGCCAAAAAATTACTACCAGGCCCTGATTCACCACAAGTTCAGCACATGAGGCAGTTAAACAAATCCTCTGCTCAGGCTACGGATTCCACAAATGGAGGGACTTCAGGAAATCATGTCAAACTCGTTGGGGCACCAACCCAGATACCTCAGCAACGACCTGGATTTACCAAACAGCAATTGCATGTACTTAAAGCACAGATATTAGCATTTAGGAGGCTGAAGAAAGGAGAAGGTGCACTTCCACAAGAACTTCTTCAGGCTATTAGTCCACCACCACTTGAGTTGCAATTGCAGCAGACGATCCATCATGCTGGAGGACAGAATATGGAGAAATCTGCTGGCAATACTGTGGCAGAACACCCAAGGCAAATTGAGTCTAAATCAAAAGATTTTGAATCTGTCCCTGCAATAAATGATCAGAGTTCCTCAAAGCACGAAGCCGTTTCCAGAGATGAGAAATCCACAGCTCCAACAGTTCATATGCAAGCTATGCCAGTTGTGGTAAAGGAAGCTGCTCCTGCTGGAAAAGAAGAGCAGCAATCAATGAAGTCAGACCAGGAGAATGATTGTGGAATTAACAGAACTCCTGTTAGAACTGAGTTGCCATTAGATAGGGGAAAGGCTATCATACCACATGACACAGTTCAACTTAAGAAACCTGCACAAACTAGCGCTGTTACCCAGTCAAAGGATGTGGCATCCACCGGAAAATATCATGGACCCCTTTTTGATTTCCCCTTTTTCACGAGGAAACCTGACTCATTTGGGTTATCTATGGTGGTGAACAACAATAATTTGTCTCTTTCATATGATGTCAAAGATCTTCTTTATGAGGAAGGCATGGAAGTACTTACAAAGAGAAGGGCTGAAAATTTAAAAAAGATTGAAGGTTTACTGGCAGTGAACTTGGAGAGAAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGATTGAGGGATGAGATTGATCAGCAGCAACAAGAGATAATGACAATGCCAGATAGGCCATATCGTAAGTTTGTTAGACTGTGTGAGCGTCAGCGTACAGAACTTGCTAGACAAATGCAAGCCTCTCAAAGAGCTTTACGAGAGAAACAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACATTGGGCTGTTCGTGATGCTCGAATTGCCCGCAACAGGGGTGTGGGCAAATATCATGAGAGACTGTTGAGGGAATTCTCAAAGCGTAAAGATGATGATAGGAACAAAAGGATGGAAGCCTTAAAAAATAATGATGTTGATAGATACAGGGAGATGTTGCTAGAGCAGCAGACTAGCATCCCAGGTGATGCTGCAGAGAGATATGCTGTTCTTTCATCCTTCTTAACACAGACTGAGGATTATCTACAAAAATTGGGAAGTAAAATAACAGTTTCCAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAGAGCCTCTGCAGCCGCTGCACGATTGCAGGGTCTCTCTGAAGAAGAAGTCAGAGCAGCCGCAGCTTGTGCTGGGGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTTAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAAAAGGTCATAAGGCAGCCATCCATGTTACGAGCTGGAACCTTGAGAGACTATCAGCTTGTTGGCTTGCAGTGGATGCTTTCATTGTATAACAACAAGTTAAATGGAATTTTAGCAGACGAAATGGGCCTTGGTAAAACTGTGCAGGTTATGGCCTTAATTGCCTACTTGATGGAATTTAAAGGAAATTATGGCCCACATCTTATAATTGTTCCAAATGCAGTAATGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCCTCTGTGTCATGCATCTTTTATGTTGGGGGGAAGGACCAACGGTCAAAATTATTTTCTCAAGAGGTTTCCGCCATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATTATGTATGACCGGTCCAAATTGTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTGGCTCGTGATCTTGATAGATATCGTTGTCAGAGACGTCTTCTTCTGACAGGAACACCATTGCAGAATGATCTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTCCCAGAGGTTTTTGATAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTGAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCCCCGAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTATCCAGAGTGCCATTTATGACTGGATCAAATTCACTGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCTTAGAGTTCAAAAGAATCCACTTTACCAGGTGAAGCAGTACAAGACTTTAAATAATAGATGCATGGAGCTGCGTAAGACGTGCAATCATCCGTTGCTTAATTACCCATACTTCCATGACTTATCCAAAGATTTCCTTCTGAAATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATTAAACTGCAACGAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAACTTCTAGACATTATAGAAGAATACCTGCAATGGCGGCAACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAAGCAGCTATAATGGACTTTAATAGCCCAGATTCAGACTGTTTCATCTTCTTGCTTAGCATTAGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCAGCAGACACAGTCATCATATATGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCAAGGGCTCATCGCATTGGACAGACTAGAGAAGTCAGGGTTATCTACATGGAAGCTGTTGTTGACCAAATTCCAAACCATCAAAAAGAAGATGAATATAGAAGTGGGGGCACTGTCAATTTGGAGGATGAACTTGCTGGTAAGGATCGTTATATGGGATCCATTGAGAGCCTCATTAGGAACAATATTCAACAATACAAGATTGATATGGCTGACGAGGTCATCAATGCTGGACGTTTTGATCAAAGAACAACACACGAAGAGAGACGTATGACTTTGGAGACATTATTACATGACGAAGAAAGATATCAAGAAACTGTCCATGATGTTCCCTCTCTACAGGAGGTGAATCACATGATTGCCAGGAGTGAAGAAGAGCTCGAACTGTTTGATCAAATGGATGAAGAACTGGATTGGACTGAGGAGATGACACGGTATGATCAAGTGCCTAAGTGGCTTAGAGCCAGTACAAAAGAAGTCAATGCCACTATTGCTGCATTATCAAAAAGACCTTCAAAGAACACTTTCTTGGGTGGTAATATTGCGGAATCCAGTGAAATGGGTTCTGATGCATCTGCAAAAAGTGAAAGGAGAAGAGGACGACCCAAGGGGAAAAAACATCCCAGTTATAAAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTTTAAATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTATAGTGATGCTGATGGAGCTCAATTAAATAACAAAGATCAAATGGATGACGGTCCACCTTGTGATGCAGGGTATGAATTTCCCCGTTCCTCAGAAAGCATGAGAAACAGTCATATGGTTGAAGCAGCTGCTTCCTCAGGGTCATCCTCAGACAGTCAAAGATTGACGCAGACTATATTTCTGTCAGTTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATTCTAGGCCTAGTTCCATTTCCAAAATGATGACAGAAGAATTAGAGGAAGGGGAAATTGCAGTATCTGGTGATTCTCATGTGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGAGGAAGGAGAAGATGAACAGGCTTTGCAACCCAAATTTAAACGGAAACGCAGTCGCCGTGTTCGACCCTGTCTTGCTACTACGGACAGGGTTGAGGAAAAGTCTGGCAGTGAGATGGCACCTCTTCAACATGGAAAATCGGCTCATTTGACTGTCCACGCAGACCAGAAATATCATGCACAATCACGGACTGAACCTGATGCAAAATCACTTGGAGAATTTAATGCTGCCAGGCATGATCAGAATGAGTTATTGTTAACAAATAAGCGAAGTATGCCTTCAAAGAGAGTAACTAATAAATTGCATGGTTCACCTAAATCTGGTAGATTGAATTGTATTTCTGCCCCTTCAGAGGATGATGGTGAACAACTCAGAGAAAAGTGGGAGGGTAAGCCTATCAATTCAATTGGGTCTTCAGCTATTGGTGCTAAAATGTCTGAAATGGTACAGAGAAAGTGCAAGAATGTAATTAGCAAGTTTCAAAGGAGAATAGATAAGGAAGGTCATCGGATTGTTCCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACACACTGGTGGGTGTGGGAATAATTGGTTGGACATACAGAAGATTGATCAGCGAATTGATAGGTTTGAATATAATGGAGTATTGGAGCTTGTGTGTGATGTGCAGTTCATGCTGAAGTGTGCGATGGATTTTTATGGGTTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCACGATCTCTTCTTTGGTATCTTGAAAGTTGCATTTCCTGATACGGACTTTCAAGGGCCAAGAAGTGCACTTTCTTTTGCTGCACCGACTTCAGTCAGTACTCTTGCATCCCCAAGGCATTTAGCTGTTGGCCAAAGCAGAAGGCACAAGCCGATAAATGAGGTGGAAAATGATCCGGGCCCCTCACAGAAGCAACTGCATCGGGGTTTTTTTCCGAGTGGTGAAAGCACCAGGATCAGAGTGCATCTGCCACCTAAGGATTCAAGAACTGGAACAGCTTCTGGCAGCACCAGAGAGCAAACTCAGCAGGATGATTCTCCGCTACTCACTCATCCAGGTGAACTGGTAGTGTGCAAGAAGAGAAGAAATGAGAGGGACAAATCCTCAGGGAAGACTAGGGGTGGCTCAGCCGGCCCTGTTTCTCCGCCTAGCTCTGGTCCTGCTATAAGAAGTCCAGTACCAAGTTCAGGTTCAAAGGATGCTAGACTGGCTCAACAGACTGCTCAAGGGTGGACACGCCAGCCATCTCAACAACCAAACGGGTCTGGTGGATCAGCCGGTTGGGCGAATCCTGTGAAGCGGTTGAGGACGGATTCTGGGAAAAGGAGACCGAGCCATCTATAG 6708 0.4349 MQSTGPGSGGPGRNPGVGPAGRAASSAASPSSSSSAVSTSHLGLDTLQQQQHQQIGSRQSLQQQLLRKPEGNETFLSYQAGLQGVYGANNFSSPSPVQLPQQSRKSIDFAQHGSSQEPQIRGQGIEQQMPNPIHQAYLQYALQAAQQKSALAMESQQQTKMGMLGPSNIKDQEMRMGNLKMQELISLQAVNQTQCLTPRNSSEQFSRGEKQIEQGQHQATDHKIEGKSSTQGQAIGHIMPGNMTRPMQAPTTPQGIQNVVNNQMVVSAQMHAMQAWAHERNIDLSHPANAYLMARLIPMMQSKMVSQQKPSENNVAPQSSPAPVSKQQVTSPMENPAHANSSSELSGQSGCAKVRQVVPPSHFVPPTNADTAGSSSDVVQQINIHGRESQASLRQPVTVGNGLPPMHPQQFSANMNLGADHSLNAKKLLPGPDSPQVQHMRQLNKSSAQATDSTNGGTSGNHVKLVGAPTQIPQQRPGFTKQQLHVLKAQILAFRRLKKGEGALPQELLQAISPPPLELQLQQTIHHAGGQNMEKSAGNTVAEHPRQIESKSKDFESVPAINDQSSSKHEAVSRDEKSTAPTVHMQAMPVVVKEAAPAGKEEQQSMKSDQENDCGINRTPVRTELPLDRGKAIIPHDTVQLKKPAQTSAVTQSKDVASTGKYHGPLFDFPFFTRKPDSFGLSMVVNNNNLSLSYDVKDLLYEEGMEVLTKRRAENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMTMPDRPYRKFVRLCERQRTELARQMQASQRALREKQLKSIFQWRKKLLEAHWAVRDARIARNRGVGKYHERLLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLTQTEDYLQKLGSKITVSKNQQEVEEAARASAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYNLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWIKFTGTLRLDPEDEKLRVQKNPLYQVKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKDFLLKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIIEEYLQWRQLVYRRIDGTTSLEDREAAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVIYMEAVVDQIPNHQKEDEYRSGGTVNLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNHMIARSEEELELFDQMDEELDWTEEMTRYDQVPKWLRASTKEVNATIAALSKRPSKNTFLGGNIAESSEMGSDASAKSERRRGRPKGKKHPSYKELEDENGESSEASSEERNGYSLNEEGEIGEFEDDGYSDADGAQLNNKDQMDDGPPCDAGYEFPRSSESMRNSHMVEAAASSGSSSDSQRLTQTIFLSVSSQKFGSLSALDSRPSSISKMMTEELEEGEIAVSGDSHVDHQQSGSWIHDREEGEDEQALQPKFKRKRSRRVRPCLATTDRVEEKSGSEMAPLQHGKSAHLTVHADQKYHAQSRTEPDAKSLGEFNAARHDQNELLLTNKRSMPSKRVTNKLHGSPKSGRLNCISAPSEDDGEQLREKWEGKPINSIGSSAIGAKMSEMVQRKCKNVISKFQRRIDKEGHRIVPLLTDLWKKNSGHTGGCGNNWLDIQKIDQRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSHEVRSEARKVHDLFFGILKVAFPDTDFQGPRSALSFAAPTSVSTLASPRHLAVGQSRRHKPINEVENDPGPSQKQLHRGFFPSGESTRIRVHLPPKDSRTGTASGSTREQTQQDDSPLLTHPGELVVCKKRRNERDKSSGKTRGGSAGPVSPPSSGPAIRSPVPSSGSKDARLAQQTAQGWTRQPSQQPNGSGGSAGWANPVKRLRTDSGKRRPSHL 2235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1772 1794 - -
Prci13g0197 2235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1004 1169 IPR014001 -
Prci13g0197 2235 CDD SF2_C_SNF 1318 1443 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 2065 2235 - -
Prci13g0197 2235 SUPERFAMILY Bromodomain 1981 2042 IPR036427 GO:0005515
Prci13g0197 2235 Gene3D - 1232 1441 IPR027417 -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1702 1726 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 535 581 - -
Prci13g0197 2235 PANTHER SNF2/RAD54 HELICASE FAMILY 724 1787 - -
Prci13g0197 2235 Gene3D - 793 867 - -
Prci13g0197 2235 SMART ultradead3 988 1177 IPR014001 -
Prci13g0197 2235 SMART bromo_6 1932 2041 IPR001487 GO:0005515
Prci13g0197 2235 FunFam ATP-dependent helicase BRM 983 1231 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 303 350 - -
Prci13g0197 2235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1222 IPR027417 -
Prci13g0197 2235 FunFam Brahma1 1930 2051 - -
Prci13g0197 2235 Pfam SNF2-related domain 995 1299 IPR000330 GO:0005524|GO:0140658
Prci13g0197 2235 Pfam QLQ 479 512 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci13g0197 2235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1323 1500 IPR001650 -
Prci13g0197 2235 SMART QLQ_2 477 514 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1778 1794 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 2186 2213 - -
Prci13g0197 2235 Pfam Helicase conserved C-terminal domain 1322 1433 IPR001650 -
Prci13g0197 2235 ProSiteProfiles QLQ domain profile. 478 514 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci13g0197 2235 MobiDBLite consensus disorder prediction 25 66 - -
Prci13g0197 2235 Gene3D - 983 1231 IPR038718 -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1881 1906 - -
Prci13g0197 2235 Coils Coil 742 766 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1 66 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 596 620 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1598 1615 - -
Prci13g0197 2235 SMART helicmild6 1349 1433 IPR001650 -
Prci13g0197 2235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1563 IPR027417 -
Prci13g0197 2235 FunFam ATP-dependent helicase BRM 1232 1442 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 437 459 - -
Prci13g0197 2235 Gene3D - 1929 2047 IPR036427 GO:0005515
Prci13g0197 2235 MobiDBLite consensus disorder prediction 405 419 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 1598 1726 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 2143 2159 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 386 459 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 303 352 - -
Prci13g0197 2235 Coils Coil 786 806 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 2117 2136 - -
Prci13g0197 2235 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0197 Prci-Chr13 1190482 1204045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0197 1013 1461 RAD5 or RAD16-like Gene Family AT1G02670 25.806 2.50e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci13g0197 SNF2_N 1.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0197 K11647 - gmx:100807104 3218.71