Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0196 ATGCAATCTACTGGTCCCGGCAGTGGTGGACCCGGCCGGAACCCGGGAGTGGGGCCGGCAGGGCGCGCCGCATCATCAGCTGCTTCCCCATCCTCTTCATCTTCAGCAGTGTCGACGTCGCACTTGGGGTTAGACACTTTACAGCAGCAGCAACACCAGCAGATTGGTTCTAGGCAGTCATTGCAACAACAACTACTTAGAAAACCTGAAGGGAATGAAACATTTTTATCATATCAAGCAGGGCTTCAAGGGGTATATGGTGCTAACAATTTCTCATCTCCCAGTCCTGTACAACTGCCCCAGCAATCACGGAAATCAATTGATTTTGCTCAGCATGGTTCCAGTCAGGAGCCCCAGATCAGGGGTCAAGGCATTGAGCAACAAATGCCTAATCCTATCCATCAAGCATACCTTCAATATGCTCTGCAAGCTGCCCAACAAAAGTCTGCTTTGGCTATGGAATCACAACAGCAAACTAAAATGGGAATGTTAGGCCCTTCAAACATAAAGGATCAAGAAATGCGTATGGGAAACTTGAAAATGCAGGAACTAATTTCCTTGCAGGCAGTTAATCAAACACAATGTTTGACTCCTAGGAATTCATCTGAACAATTCTCTCGTGGGGAAAAGCAGATTGAACAAGGACAGCATCAAGCAACAGATCACAAGATTGAGGGAAAGTCTTCGACCCAGGGACAGGCCATTGGGCACATAATGCCTGGAAATATGACAAGACCCATGCAAGCACCAACAACTCCTCAAGGCATCCAAAATGTTGTGAACAACCAGATGGTGGTATCTGCTCAAATGCATGCTATGCAGGCTTGGGCACATGAACGCAACATTGATCTATCACATCCTGCAAATGCTTACTTAATGGCACGACTCATTCCTATGATGCAGTCAAAGATGGTTTCACAACAAAAGCCAAGTGAGAACAATGTTGCTCCTCAGTCATCACCTGCCCCTGTTTCTAAACAGCAAGTTACTTCTCCAATGGAGAACCCAGCACATGCTAATTCATCAAGTGAATTGTCTGGGCAGTCTGGATGTGCAAAAGTGAGGCAGGTAGTTCCCCCCAGCCACTTCGTTCCACCAACCAATGCTGATACAGCTGGTAGTAGCAGTGATGTTGTGCAACAAATTAACATTCATGGCAGAGAGTCTCAAGCATCTCTGAGGCAACCTGTTACTGTTGGGAATGGATTGCCTCCCATGCATCCCCAACAATTTTCTGCTAACATGAATCTTGGTGCAGACCATTCTTTGAATGCCAAAAAATTACTACCAGGCCCTGATTCACCACAAGTTCAGCACATGAGGCAGTTAAACAAATCCTCTGCTCAGGCTACGGATTCCACAAATGGAGGGACTTCAGGAAATCATGTCAAACTCGTTGGGGCACCAACCCAGATACCTCAGCAACGACCTGGATTTACCAAACAGCAATTGCATGTACTTAAAGCACAGATATTAGCATTTAGGAGGCTGAAGAAAGGAGAAGGTGCACTTCCACAAGAACTTCTTCAGGCTATTAGTCCACCACCACTTGAGTTGCAATTGCAGCAGACGATCCATCATGCTGGAGGACAGAATATGGAGAAATCTGCTGGCAATACTGTGGCAGAACACCCAAGGCAAATTGAGTCTAAATCAAAAGATTTTGAATCTGTCCCTGCAATAAATGATCAGAGTTCCTCAAAGCACGAAGCCGTTTCCAGAGATGAGAAATCCACAGCTCCAACAGTTCATATGCAAGCTATGCCAGTTGTGGTAAAGGAAGCTGCTCCTGCTGGAAAAGAAGAGCAGCAATCAATGAAGTCAGACCAGGAGAATGATTGTGGAATTAACAGAACTCCTGTTAGAACTGAGTTGCCATTAGATAGGGGAAAGGCTATCATACCACATGACACAGTTCAACTTAAGAAACCTGCACAAACTAGCGCTGTTACCCAGTCAAAGGATGTGGCATCCACCGGAAAATATCATGGACCCCTTTTTGATTTCCCCTTTTTCACGAGGAAACCTGACTCATTTGGGTTATCTATGGTGGTGAACAACAATAATTTGTCTCTTTCATATGATGTCAAAGATCTTCTTTATGAGGAAGGCATGGAAGTACTTACAAAGAGAAGGGCTGAAAATTTAAAAAAGATTGAAGGTTTACTGGCAGTGAACTTGGAGAGAAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGATTGAGGGATGAGATTGATCAGCAGCAACAAGAGATAATGACAATGCCAGATAGGCCATATCGTAAGTTTGTTAGACTGTGTGAGCGTCAGCGTACAGAACTTGCTAGACAAATGCAAGCCTCTCAAAGAGCTTTACGAGAGAAACAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACATTGGGCTGTTCGTGATGCTCGAATTGCCCGCAACAGGGGTGTGGGCAAATATCATGAGAGACTGTTGAGGGAATTCTCAAAGCGTAAAGATGATGATAGGAACAAAAGGATGGAAGCCTTAAAAAATAATGATGTTGATAGATACAGGGAGATGTTGCTAGAGCAGCAGACTAGCATCCCAGGTGATGCTGCAGAGAGATATGCTGTTCTTTCATCCTTCTTAACACAGACTGAGGATTATCTACAAAAATTGGGAAGTAAAATAACAGTTTCCAAAAATCAGCAGGAAGTGGAAGAGGCAGCAAGAGCCTCTGCAGCCGCTGCACGATTGCAGGGTCTCTCTGAAGAAGAAGTCAGAGCAGCCGCAGCTTGTGCTGGGGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTTAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAAAAGGTCATAAGGCAGCCATCCATGTTACGAGCTGGAACCTTGAGAGACTATCAGCTTGTTGGCTTGCAGTGGATGCTTTCATTGTATAACAACAAGTTAAATGGAATTTTAGCAGACGAAATGGGCCTTGGTAAAACTGTGCAGGTTATGGCCTTAATTGCCTACTTGATGGAATTTAAAGGAAATTATGGCCCACATCTTATAATTGTTCCAAATGCAGTAATGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCCTCTGTGTCATGCATCTTTTATGTTGGGGGGAAGGACCAACGGTCAAAATTATTTTCTCAAGAGGTTTCCGCCATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATTATGTATGACCGGTCCAAATTGTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTGGCTCGTGATCTTGATAGATATCGTTGTCAGAGACGTCTTCTTCTGACAGGAACACCATTGCAGAATGATCTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTCCCAGAGGTTTTTGATAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATCGACTCCATCAGATTCTTGAGCCTTTCATGCTGAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCCCCGAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTATCCAGAGTGCCATTTATGACTGGATCAAATTCACTGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCTTAGAGTTCAAAAGAATCCACTTTACCAGGTGAAGCAGTACAAGACTTTAAATAATAGATGCATGGAGCTGCGTAAGACGTGCAATCATCCGTTGCTTAATTACCCATACTTCCATGACTTATCCAAAGATTTCCTTCTGAAATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATTAAACTGCAACGAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAACTTCTAGACATTATAGAAGAATACCTGCAATGGCGGCAACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAAGCAGCTATAATGGACTTTAATAGCCCAGATTCAGACTGTTTCATCTTCTTGCTTAGCATTAGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCAGCAGACACAGTCATCATATATGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCAAGGGCTCATCGCATTGGACAGACTAGAGAAGTCAGGGTTATCTACATGGAAGCTGTTGTTGACCAAATTCCAAACCATCAAAAAGAAGATGAATATAGAAGTGGGGGCACTGTCAATTTGGAGGATGAACTTGCTGGTAAGGATCGTTATATGGGATCCATTGAGAGCCTCATTAGGAACAATATTCAACAATACAAGATTGATATGGCTGACGAGGTCATCAATGCTGGACGTTTTGATCAAAGAACAACACACGAAGAGAGACGTATGACTTTGGAGACATTATTACATGACGAAGAAAGATATCAAGAAACTGTCCATGATGTTCCCTCTCTACAGGAGGTGAATCACATGATTGCCAGGAGTGAAGAAGAGCTCGAACTGTTTGATCAAATGGATGAAGAACTGGATTGGACTGAGGAGATGACACGGTATGATCAAGTGCCTAAGTGGCTTAGAGCCAGTACAAAAGAAGTCAATGCCACTATTGCTGCATTATCAAAAAGACCTTCAAAGAACACTTTCTTGGGTGGTAATATTGCGGAATCCAGTGAAATGGGTTCTGATGCATCTGCAAAAAGTGAAAGGAGAAGAGGACGACCCAAGGGGAAAAAACATCCCAGTTATAAAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTTTAAATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTATAGTGATGCTGATGGAGCTCAATTAAATAACAAAGATCAAATGGATGACGGTCCACCTTGTGATGCAGGGTATGAATTTCCCCGTTCCTCAGAAAGCATGAGAAACAGTCATATGGTTGAAGCAGCTGCTTCCTCAGGGTCATCCTCAGACAGTCAAAGATTGACGCAGACTATATTTCTGTCAGTTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATTCTAGGCCTAGTTCCATTTCCAAAATGATGACAGAAGAATTAGAGGAAGGGGAAATTGCAGTATCTGGTGATTCTCATGTGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGAGGAAGGAGAAGATGAACAGGCTTTGCAACCCAAATTTAAACGGAAACGCAGTCGCCGTGTTCGACCCTGTCTTGCTACTACGGACAGGGTTGAGGAAAAGTCTGGCAGTGAGATGGCACCTCTTCAACATGGAAAATCGGCTCATTTGACTGTCCACGCAGACCAGAAATATCATGCACAATCACGGACTGAACCTGATGCAAAATCACTTGGAGAATTTAATGCTGCCAGGCATGATCAGAATGAGTTATTGTTAACAAATAAGCGAAAGGATGATGGTGAACAACTCAGAGAAAAGTGGGAGGGTAAGCCTATCAATTCAATTGGGTCTTCAGCTATTGGTGCTAAAATGTCTGAAATGGTACAGAGAAAGTGCAAGAATGTAATTAGCAAGTTTCAAAGGAGAATAGATAAGGAAGGTCATCGGATTGTTCCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACACACTGGTGGGTGTGGGAATAATTGGTTGGACATACAGAAGATTGATCAGCGAATTGATAGGTTTGAATATAATGGAGTATTGGAGCTTGTGTGTGATGTGCAGTTCATGCTGAAGTGTGCGATGGATTTTTATGGGTTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCACGATCTCTTCTTTGGTATCTTGAAAGTTGCATTTCCTGATACGGACTTTCAAGGGCCAAGAAGTGCACTTTCTTTTGCTGCACCGACTTCAGTCAGTACTCTTGCATCCCCAAGGCATTTAGCTGTTGGCCAAAGCAGAAGGCACAAGCCGATAAATGAGGTGGAAAATGATCCGGGCCCCTCACAGAAGCAACTGCATCGGGGTTTTTTTCCGAGTGGTGAAAGCACCAGGATCAGAGTGCATCTGCCACCTAAGGATTCAAGAACTGGAACAGCTTCTGGCAGCACCAGAGAGCAAACTCAGCAGGATGATTCTCCGCTACTCACTCATCCAGGTGAACTGGTAGTGTGCAAGAAGAGAAGAAATGAGAGGGACAAATCCTCAGGGAAGACTAGGGGTGGCTCAGCCGGCCCTGTTTCTCCGCCTAGCTCTGGTCCTGCTATAAGAAGTCCAGTACCAAGTTCAGGTTCAAAGGATGCTAGACTGGCTCAACAGACTGCTCAAGGGTGGACACGCCAGCCATCTCAACAACCAAACGGGTCTGGTGGATCAGCCGGTTGGGCGAATCCTGTGAAGCGGTTGAGGACGGATTCTGGGAAAAGGAGACCGAGCCATCTATAG 6627 0.4356 MQSTGPGSGGPGRNPGVGPAGRAASSAASPSSSSSAVSTSHLGLDTLQQQQHQQIGSRQSLQQQLLRKPEGNETFLSYQAGLQGVYGANNFSSPSPVQLPQQSRKSIDFAQHGSSQEPQIRGQGIEQQMPNPIHQAYLQYALQAAQQKSALAMESQQQTKMGMLGPSNIKDQEMRMGNLKMQELISLQAVNQTQCLTPRNSSEQFSRGEKQIEQGQHQATDHKIEGKSSTQGQAIGHIMPGNMTRPMQAPTTPQGIQNVVNNQMVVSAQMHAMQAWAHERNIDLSHPANAYLMARLIPMMQSKMVSQQKPSENNVAPQSSPAPVSKQQVTSPMENPAHANSSSELSGQSGCAKVRQVVPPSHFVPPTNADTAGSSSDVVQQINIHGRESQASLRQPVTVGNGLPPMHPQQFSANMNLGADHSLNAKKLLPGPDSPQVQHMRQLNKSSAQATDSTNGGTSGNHVKLVGAPTQIPQQRPGFTKQQLHVLKAQILAFRRLKKGEGALPQELLQAISPPPLELQLQQTIHHAGGQNMEKSAGNTVAEHPRQIESKSKDFESVPAINDQSSSKHEAVSRDEKSTAPTVHMQAMPVVVKEAAPAGKEEQQSMKSDQENDCGINRTPVRTELPLDRGKAIIPHDTVQLKKPAQTSAVTQSKDVASTGKYHGPLFDFPFFTRKPDSFGLSMVVNNNNLSLSYDVKDLLYEEGMEVLTKRRAENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMTMPDRPYRKFVRLCERQRTELARQMQASQRALREKQLKSIFQWRKKLLEAHWAVRDARIARNRGVGKYHERLLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLTQTEDYLQKLGSKITVSKNQQEVEEAARASAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYNLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWIKFTGTLRLDPEDEKLRVQKNPLYQVKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKDFLLKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIIEEYLQWRQLVYRRIDGTTSLEDREAAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVIYMEAVVDQIPNHQKEDEYRSGGTVNLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNHMIARSEEELELFDQMDEELDWTEEMTRYDQVPKWLRASTKEVNATIAALSKRPSKNTFLGGNIAESSEMGSDASAKSERRRGRPKGKKHPSYKELEDENGESSEASSEERNGYSLNEEGEIGEFEDDGYSDADGAQLNNKDQMDDGPPCDAGYEFPRSSESMRNSHMVEAAASSGSSSDSQRLTQTIFLSVSSQKFGSLSALDSRPSSISKMMTEELEEGEIAVSGDSHVDHQQSGSWIHDREEGEDEQALQPKFKRKRSRRVRPCLATTDRVEEKSGSEMAPLQHGKSAHLTVHADQKYHAQSRTEPDAKSLGEFNAARHDQNELLLTNKRKDDGEQLREKWEGKPINSIGSSAIGAKMSEMVQRKCKNVISKFQRRIDKEGHRIVPLLTDLWKKNSGHTGGCGNNWLDIQKIDQRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSHEVRSEARKVHDLFFGILKVAFPDTDFQGPRSALSFAAPTSVSTLASPRHLAVGQSRRHKPINEVENDPGPSQKQLHRGFFPSGESTRIRVHLPPKDSRTGTASGSTREQTQQDDSPLLTHPGELVVCKKRRNERDKSSGKTRGGSAGPVSPPSSGPAIRSPVPSSGSKDARLAQQTAQGWTRQPSQQPNGSGGSAGWANPVKRLRTDSGKRRPSHL 2208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0196 2208 MobiDBLite consensus disorder prediction 2116 2132 - -
Prci13g0196 2208 Pfam QLQ 479 512 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci13g0196 2208 MobiDBLite consensus disorder prediction 2038 2208 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 1772 1794 - -
Prci13g0196 2208 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1004 1169 IPR014001 -
Prci13g0196 2208 CDD SF2_C_SNF 1318 1443 - -
Prci13g0196 2208 PANTHER SNF2/RAD54 HELICASE FAMILY 709 1749 - -
Prci13g0196 2208 Gene3D - 1232 1441 IPR027417 -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 1702 1726 - -
Prci13g0196 2208 SMART bromo_6 1905 2014 IPR001487 GO:0005515
Prci13g0196 2208 MobiDBLite consensus disorder prediction 535 581 - -
Prci13g0196 2208 SMART ultradead3 988 1177 IPR014001 -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 386 408 - -
Prci13g0196 2208 FunFam ATP-dependent helicase BRM 983 1231 - -
Prci13g0196 2208 FunFam Brahma1 1903 2024 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 303 350 - -
Prci13g0196 2208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1222 IPR027417 -
Prci13g0196 2208 Pfam SNF2-related domain 995 1299 IPR000330 GO:0005524|GO:0140658
Prci13g0196 2208 Gene3D - 793 867 - -
Prci13g0196 2208 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1323 1500 IPR001650 -
Prci13g0196 2208 SMART QLQ_2 477 514 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci13g0196 2208 Gene3D - 1902 2020 IPR036427 GO:0005515
Prci13g0196 2208 Pfam Helicase conserved C-terminal domain 1322 1433 IPR001650 -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 1778 1794 - -
Prci13g0196 2208 SUPERFAMILY Bromodomain 1954 2015 IPR036427 GO:0005515
Prci13g0196 2208 ProSiteProfiles QLQ domain profile. 478 514 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci13g0196 2208 MobiDBLite consensus disorder prediction 25 66 - -
Prci13g0196 2208 Gene3D - 983 1231 IPR038718 -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 425 459 - -
Prci13g0196 2208 Coils Coil 742 766 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 2159 2186 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 1 66 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 1598 1615 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 596 620 - -
Prci13g0196 2208 SMART helicmild6 1349 1433 IPR001650 -
Prci13g0196 2208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1563 IPR027417 -
Prci13g0196 2208 FunFam ATP-dependent helicase BRM 1232 1442 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 437 459 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 2090 2109 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 1598 1726 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 303 352 - -
Prci13g0196 2208 Coils Coil 786 806 - -
Prci13g0196 2208 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0196 Prci-Chr13 1190481 1204045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0196 1013 1461 RAD5 or RAD16-like Gene Family AT1G02670 26.054 2.08e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci13g0196 SNF2_N 1.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0196 K11647 - gmx:100807104 3164.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0196 13 1190481 1204045 Prci13g0196 13 1190481 1204045 ECH