Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0141 ATGGGGATTCAGTGCTCCAGACTCATTCCATGTTGTGTGAATTCACAAGTAAAGGCTTCCATTCTTGAAGCTCCAGATACTGAAAAGGAGGAAAGAAGTGAGGCTAATAACTGGCCTGCATTCCGTGAATTTTCATTAGAGCATCTAAAGAATGCAACATCTGGTTTTGCTGTTGAGAATATTGTATCTGAACATGGAGAGAAGGCACCAAATGTTGTTTATAAAGGAAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGCGCTTTAATAGAAATGCTTGGCCTGATGGCCGGCAGTTTTTGGAGGAAGCGAGATCTGTTGGTGAACTCCGCAACCAGCGACTAGCAAATTTGATTGGTTGTTGTTGTGAAGGTGATGAGAGGTTGCTTGTGGCAGAATTTATGCCAAATGAAACACTGGCAAAACACCTTTTCCATTGGGAAACACAGCCTATGCAATGGGCAATGCGATTAAGAGTTGTTTTCCATCTTGCACAAGCTCTAGAATATTGCACAGGAAAAGGGCGTGCCCTCTATCATGACCTTAATGCATACAGAGTTTTATTTGATGAGGATGGCAATCCTAGGCTTTCTACTTTTGGCCTTATGAAGAATAGTAGGGATGGGAAGAGTTATAGCACAAATTTGGCTTTTACCCCTCCAGAATATCTGAGAACTGGGAGAGTAACAGCAGAAAGTGTAATATATAGTTTCGGCACTCTTTTGCTTGACCTTCTAAGTGGGAAGCATATCCCCCCAAGCCATGCCCTTGATTTAATTCGAGACAGAAATCTTCAAATGCTTACAGATTCTTGTTTGGAAGGACAATTTTCGGATGATGATGGAACTGAGTTGGTACGCTTGGCATCTCGTTGCTTACAGTATGAACCTAGAGAAAGGCCTAATCCTAGATCATTGGTGGCTGCCTTGGCTCCTCTTCAGAAAGAAACAGAGGTTTCTTCACATGTCTTGATGGGAATCCCACATGGTGATGCTACCTTTGCTTCGTTGTCCCCACTTGGTGAAGCATGCTCGAGAAAGGATTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGACAAATGAGCTATCGTTCCAGGTTTGGACTGATGAAATGCAGGAAACACTTAACAGTAAGAAAAAGGGGGACGTTGCTTTCCAGCAGAAGGATTTTAGAGTTGCAATAGGGTGCTACACACAGGAAGCACTGAACGATGCAATGCAGGCACAAGTCGTATCCCCTGTATGGCACATAGCATCGTACCTTCAATTTCTTGCCCTCTCTGGACTTGGTATGGAGACTGAAGCTCAAGTAGCACTTAAAGAAGGCACAACTTTGGAAGCCAAGAGAAGTGAAACTTCTGGACATAAGTGA 1398 0.4299 MGIQCSRLIPCCVNSQVKASILEAPDTEKEERSEANNWPAFREFSLEHLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDGRQFLEEARSVGELRNQRLANLIGCCCEGDERLLVAEFMPNETLAKHLFHWETQPMQWAMRLRVVFHLAQALEYCTGKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPRSLVAALAPLQKETEVSSHVLMGIPHGDATFASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNELSFQVWTDEMQETLNSKKKGDVAFQQKDFRVAIGCYTQEALNDAMQAQVVSPVWHIASYLQFLALSGLGMETEAQVALKEGTTLEAKRSETSGHK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0141 465 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Prci13g0141 465 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Prci13g0141 465 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Prci13g0141 465 SUPERFAMILY TPR-like 385 460 IPR011990 GO:0005515
Prci13g0141 465 SUPERFAMILY Protein kinase-like (PK-like) 35 315 IPR011009 -
Prci13g0141 465 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Prci13g0141 465 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 19 408 IPR045845 GO:0004672|GO:0009742
Prci13g0141 465 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Prci13g0141 465 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0141 Prci-Chr13 893166 901006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0141 10 331 Glycoside Hydrolase AT3G07070 32.857 2.60e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Prci13g0141 PK_Tyr_Ser-Thr 6.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0141 K14500 - gmx:100781311 824.698