Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0139 ATGGATCGGGGGGACCAAATGGCGTTGTCTGGGTCTGCATCTTACTATATGCAGAGAGGAATAGCTGGTTCTGCAGGACAGCCTGAGCTTCATGGTTCCCCAACTATACACCAACTTTCTAATTCGAATCTACCATTTCAACCCAGCATTGGGGGTGGTACTATTGGATCCACGCTACCATTAGAATCTTCAGCCATTTCACCTCATGGTGTTAACGTGGGTGCTTCATCTGGAGTGCCATCTGGTGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAACCGTGTCACTGGCATTGACTCCACTGTCGTCTAGTCATCCCGGAACCGGTCAGTCTGGAAGTGGAACTGTGACACAGAGCCATAAGCGGGGTAGAGGGCGCCCACCAGGGACTGGCAAGAAGCAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCTGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGCTGGAGAAGATATTGTGTCAAGAATAATGGCATTCTCCCAGCAGGGGTCTACAGCCGTGTGTGTATTATCAGCCAATGGTGCTGTTTCAAATGCAACCCTCCGTCAGCCTTCAACTTTGGGTGGTTCTGTCACATATGAGGGGCGTTATGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTAATGAAAGTGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTCTCTCTTGCTAGTCCTGAGGGTAAAATCATTGGTGGAGGAGTCGGTGGAATGCTTATTGCAGCATGTCCCGTACAGGTGATAGTTGGGAGCTTTTCATGGGGTGGATCGAAGACCAAGAACAAGAAAAAAGAAGTTGAAGAAGCTCCCATGGAGTTGGATCGTCAGGATCATCACGCAGTTCATAATCCAGTTGGTATGAATAACATTATGGCCAATCAGAATCTCACCCCACCATCTTCTGTTGGTACATGGCCGACATCTCGTACGATGGACATTCGTAATTCCCATGTTGACATAGATTTAATGCGTGGGTGA 1041 0.4832 MDRGDQMALSGSASYYMQRGIAGSAGQPELHGSPTIHQLSNSNLPFQPSIGGGTIGSTLPLESSAISPHGVNVGASSGVPSGEPVKRKRGRPRKYGPDGTVSLALTPLSSSHPGTGQSGSGTVTQSHKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIITIAAGEDIVSRIMAFSQQGSTAVCVLSANGAVSNATLRQPSTLGGSVTYEGRYEILCLSGSYLLNESGGSRNRTGGLSVSLASPEGKIIGGGVGGMLIAACPVQVIVGSFSWGGSKTKNKKKEVEEAPMELDRQDHHAVHNPVGMNNIMANQNLTPPSSVGTWPTSRTMDIRNSHVDIDLMRG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0139 346 ProSiteProfiles PPC domain profile profile. 154 297 IPR005175 -
Prci13g0139 346 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Prci13g0139 346 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Prci13g0139 346 MobiDBLite consensus disorder prediction 24 143 - -
Prci13g0139 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 275 - -
Prci13g0139 346 CDD DUF296 159 273 IPR005175 -
Prci13g0139 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 308 IPR039605 GO:0003680
Prci13g0139 346 MobiDBLite consensus disorder prediction 103 127 - -
Prci13g0139 346 MobiDBLite consensus disorder prediction 31 71 - -
Prci13g0139 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 274 IPR005175 -
Prci13g0139 346 Gene3D - 160 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0139 Prci-Chr13 872105 880284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0139 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.189 1.61e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0139 - - qsa:O6P43_017611 489.574