Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0130 ATGAACAATAGAGCTAGATATCCGCCTGGGATTGGCGTAGGCCGAGGGGGAGGTATGAACTCAAACCCTGCGTTTCAGCCACGAGCCCCTCAGCAACAGTATGTGCAAAGACATTTGGTGCAGAATCAACAGCAGTATCAACATCAGTATCAGCAGCATCAACAGCAACATCAGCAGTTACAACAGCAGCAGCAGCAATGGCTTAGAAGAACGCAATTGAGTGGCACTGATTCTAACGTAGTTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCAAGTTCTCAAGATTGGAAGGCTAGATTAAAGATACCACCACCTGATACACGCTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATCCCAATCGCTCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAATGGAACTGGAAAAACAGCTGCATTTTGCATTCCTGCACTGGAAAAAATTGATCAGGATAACAATGTAATTCAAGTTGTTATACTGGTCCCAACCCGTGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTGGGAAAGCATCTGAAAATTCAAGTCATGGTTACAACGGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCTGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTATGTATTTTGAAAGACTGTAGCATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCTGAGTTCCAACCTTCGATAGAGCAATTAATTCACTTCCTGCCTCCAACCCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATTTCTTCAGAAACCGTATATCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTCAATACGCTTTTCTCTAAGTTGCAAATAAATCAGTCAATTATCTTTTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCATGCTTCTATATCCATGCAAAGATGTTGCAAGATCATCGCAACAGAGTATTTCATGACTTCCGAAATGGTGCTTGTAGAAATCTTGTTTGTACTGATCTTTTTACCAGGGGAATAGATATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAAAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTCTAGCAGTTAACTTGATCACCTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCTCCACACATTGATCAGGCAATTTATTGCCGGTGA 1497 0.4081 MNNRARYPPGIGVGRGGGMNSNPAFQPRAPQQQYVQRHLVQNQQQYQHQYQQHQQQHQQLQQQQQQWLRRTQLSGTDSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPPTRQILMFSATFPVTVKDFKDRFLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0130 498 Gene3D - 86 328 IPR027417 -
Prci13g0130 498 Pfam DEAD/DEAH box helicase 149 313 IPR011545 GO:0003676|GO:0005524
Prci13g0130 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 325 IPR014001 -
Prci13g0130 498 Coils Coil 43 70 - -
Prci13g0130 498 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Prci13g0130 498 CDD SF2_C_DEAD 336 465 - -
Prci13g0130 498 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 61 497 - -
Prci13g0130 498 FunFam ATP-dependent RNA helicase DDX6 329 498 - -
Prci13g0130 498 Pfam Helicase conserved C-terminal domain 350 456 IPR001650 -
Prci13g0130 498 SMART helicmild6 375 456 IPR001650 -
Prci13g0130 498 MobiDBLite consensus disorder prediction 87 108 - -
Prci13g0130 498 FunFam ATP-dependent RNA helicase DDX6 105 328 - -
Prci13g0130 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 495 IPR001650 -
Prci13g0130 498 SMART ultradead3 143 339 IPR014001 -
Prci13g0130 498 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Prci13g0130 498 Gene3D - 329 498 IPR027417 -
Prci13g0130 498 CDD DEADc_DDX6 126 326 - -
Prci13g0130 498 MobiDBLite consensus disorder prediction 1 30 - -
Prci13g0130 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0130 Prci-Chr13 813789 821361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0130 126 495 Eukaryotic Initiation Factors Gene Family AT3G19760 38.978 4.12e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0130 K12614 - qsa:O6P43_027218 872.848