Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci13g0117 | ATGGCCTTTACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTGTATGTGGTGGACCTGTTGTCCCTTGAGGGAGTTTCTTATCATAAATCTTGCTTTAAATGCAGTCACTGCAAGGGATTCCTTTCGATGAGTAGCTACTCCTCAATGGATGGTGTTCTGTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAATCTGGAAATTTCAGCAAAAACTTTCACACAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACTCAAACAAACTCTCATCACTGTTTAGTGGAACCCAAGACAAATGTGCAGTGTGCACGAAAACAGTCTATCCTCTTGAAAAGGTGACACTGGAAGGAGAATGCTACCACAAGACCTGCTTTAGATGTGCTCATGCAGGGTGTCCTCTCACTCACTCCTCCTATGCTGCTCTTGATGGTGTCCTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTGATTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACACTACTTCTCATGATCAGCCGGACCACCCTGAAAATGGCTCTCACCCAGATGAACATCCATCTCAGGACCAGGACCAGGATGACACTAAACATGAAGAGGAAGATGAGTAA | 651 | 0.4378 | MAFTGTLDKCNACDKTVYVVDLLSLEGVSYHKSCFKCSHCKGFLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSHDTSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGDYNHVKQVTAHKKNTTSHDQPDHPENGSHPDEHPSQDQDQDDTKHEEEDE | 216 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci13g0117 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 132 | 171 | - | - | |
| Prci13g0117 | 216 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
| Prci13g0117 | 216 | ProSiteProfiles | LIM domain profile. | 104 | 164 | IPR001781 | - | |
| Prci13g0117 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Prci13g0117 | 216 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Prci13g0117 | 216 | MobiDBLite | consensus disorder prediction | 175 | 207 | - | - | |
| Prci13g0117 | 216 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Prci13g0117 | 216 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Prci13g0117 | 216 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Prci13g0117 | 216 | SMART | lim_4 | 105 | 157 | IPR001781 | - | |
| Prci13g0117 | 216 | MobiDBLite | consensus disorder prediction | 175 | 216 | - | - | |
| Prci13g0117 | 216 | FunFam | LIM domain and actin-binding 1 | 100 | 170 | - | - | |
| Prci13g0117 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 2 | 35 | - | - | |
| Prci13g0117 | 216 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Prci13g0117 | 216 | Pfam | LIM domain | 106 | 161 | IPR001781 | - | |
| Prci13g0117 | 216 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Prci13g0117 | 216 | Gene3D | Cysteine Rich Protein | 100 | 170 | - | - | |
| Prci13g0117 | 216 | PANTHER | OS06G0237300 PROTEIN | 6 | 104 | - | - | |
| Prci13g0117 | 216 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 98 | 131 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci13g0117 | Prci-Chr13 | 774235 | 776986 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Prci13g0117 | LIM | 1.8e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci13g0117 | - | K09377 | gmx:100779513 | 334.724 |