Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0081 ATGAAGAAACAGATTTTCATACCATGGTGGTTTGGAATCAAGACTATGCAACTCTGCTTCTTGCTGGCTAGTTCTTCTGATGACAACATGTCAGATAGTGGTGCGGTTAAGCTAAATGCAGAAGATCCACAGCAACTGGTCATTGACAATGGCATCGTCCAACTCACTCTGTCTACACCCCAAGGCTATGTTATTGGAATCTCATACCATGGAATCGATAACGTCCTCGAATCTCGTCACGCACTACATGACAGAGGGTATTTTGATGTTGTTTGGAATGAACCAGGAAAGAATAGTATTGCTCAAAGAATCAATGGGACCCATTTTTCAATTGTAGCATCGGACGAGAGCCAAGTGGAGGTTTCGTTTGTAAGAACGTGGACTTCGTCCATGGAAGGCACTGATGTGCCCTTTAACATAGACCAAAGGTATGTATTGAGACGAGGAAGCTCTGGATTTTACCATTATATGATATTCAAGCGTCCTCAAGGATTTCCTGCTGTGGAGGTTGATCAATTTAGGACTGTCTACAAACTCCAAGAGCACAGGTTTCATTATATGGCTATATCAGACAACAGGCAAAGATTCATGCCTACCATGGAAGATAGAGAGAGCGGGCAAGTCCTAGCTTATCCTGAAGCTGTTCTCTTGACCCAGCCATCCAACAAAGACTTTAAAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAACAAAGACAACAGAGTCCATGGTTGGATTAGTTTTGATCCTGATGCACCTGTAGGCTTCTGGATGATAACACCTAGCAACGAGTTTCGCAATGGTGGCCCCACTAAGCAAGACCTCACCTCTCACGTGGGCCCCATTACCCTTTCGATGTTTGTGAGCACTCACTATGCTGGGAAAGAGGTAAGGATGGCATTCCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTTAACTCTCTTTCAGGCAACAAGGATCCACGGACGCTTTGGCCAGATGCAGTGCAACAGATGTATAAGGAAGCCCAAAGCTGGCCTCATGATTTCCCACAGTCACGAGACTTCATTCAATCCACTCAACGTGGAAGGGTGGTTGGAAGATTACTAGTACAAGATCGGTATATCAGAGGAGGAAAACTTCTATATGCTAAATCTGCTTATGTTGGTCTAGCTCTACCCGGTGATGAAGGATCGTGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACAGAAGCTGATAACAAGGGCTATTTCATGATTAAGAATGTGATACCAGGGCACTACAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAAATATAATAATATAATCACTATCACGCCAGGGTGTTTAATCAAATTGGATTCACTCGTATTTAGTCCTCCAAGAAATGGTCCTACCCTTTGGGAAATTGGAGTTCCAGATCGCTCAGCCGCAGAATTCTTTATCCCAGACCCCAACCCTAAATTCATCAACAAATTATACAATAAACAGCCTAAAGACAAGTTTAGGCAATATGGACTATGGGAAAGTTATGCTGATTTATATCCACATAATGATCTAGTTTACACTGTTGGTGTTGATAAGTATGATCGAGACTGGTTTTTTGCTCATGTTACAAGGAGAATAGGAAATGGAGTATACCAACCAACGACATGGCAAATTATATTTGAACTTGAAAATGATGCATTCCGTGGAAGTTATACTCTACAATTAGCCCTAGCATCTGCCACGCATTCTCAATTGCAGGTTTGGCTGAATGAACAAGGCGATAATCGTGGCGTATTTGAAAGAGTAGATATAGGAGGAGATAATGCAATAGCAAGGCATGGAATCCATGGATTATATTGGCTGTTCAGCATTGATGTTCCGAGCGATCGTTTAGTGAAAGGGAAAAATATTTTCTACTTTAGACAGTCAAATGCCACTAATCCTTTTCAGGGCCTCATGTATGACTATATGCGTTTAGAAAGACCTCCAACTCTCTAA 2004 0.4232 MKKQIFIPWWFGIKTMQLCFLLASSSDDNMSDSGAVKLNAEDPQQLVIDNGIVQLTLSTPQGYVIGISYHGIDNVLESRHALHDRGYFDVVWNEPGKNSIAQRINGTHFSIVASDESQVEVSFVRTWTSSMEGTDVPFNIDQRYVLRRGSSGFYHYMIFKRPQGFPAVEVDQFRTVYKLQEHRFHYMAISDNRQRFMPTMEDRESGQVLAYPEAVLLTQPSNKDFKGEVDDKYQYSCENKDNRVHGWISFDPDAPVGFWMITPSNEFRNGGPTKQDLTSHVGPITLSMFVSTHYAGKEVRMAFQEGETYKKVFGPVFVYLNSLSGNKDPRTLWPDAVQQMYKEAQSWPHDFPQSRDFIQSTQRGRVVGRLLVQDRYIRGGKLLYAKSAYVGLALPGDEGSWQRESKGYQFWTEADNKGYFMIKNVIPGHYNLFAWVPGFIGDYKYNNIITITPGCLIKLDSLVFSPPRNGPTLWEIGVPDRSAAEFFIPDPNPKFINKLYNKQPKDKFRQYGLWESYADLYPHNDLVYTVGVDKYDRDWFFAHVTRRIGNGVYQPTTWQIIFELENDAFRGSYTLQLALASATHSQLQVWLNEQGDNRGVFERVDIGGDNAIARHGIHGLYWLFSIDVPSDRLVKGKNIFYFRQSNATNPFQGLMYDYMRLERPPTL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0081 667 CDD RGL4_C 474 662 - -
Prci13g0081 667 CDD RGL4_M 362 462 IPR029413 -
Prci13g0081 667 Gene3D - 359 455 - -
Prci13g0081 667 Pfam Polysaccharide lyase family 4, domain III 472 661 IPR029411 -
Prci13g0081 667 SUPERFAMILY Galactose mutarotase-like 42 324 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci13g0081 667 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Prci13g0081 667 Gene3D - 38 322 IPR014718 GO:0030246
Prci13g0081 667 Gene3D - 470 662 - -
Prci13g0081 667 FunFam Rhamnogalacturonate lyase B 359 459 - -
Prci13g0081 667 Pfam Rhamnogalacturonate lyase family 33 229 IPR010325 -
Prci13g0081 667 SUPERFAMILY Starch-binding domain-like 360 460 IPR013784 GO:0030246
Prci13g0081 667 SUPERFAMILY Galactose-binding domain-like 469 662 IPR008979 -
Prci13g0081 667 CDD RGL4_N 45 322 - -
Prci13g0081 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 38 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0081 Prci-Chr13 653218 658303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0081 33 666 Polysaccharide Lyase AT1G09910 54.874 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0081 K18195 - gmx:100776664 957.207