Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0073 ATGTTAAGTACAACCTCGTTGCCTTCAGCTCTGCCAGATTCCGCCGTAGACCCCTCACCCCTTCTTCGTTACTCCGTCTCCGATCAATTGCTCCGACGGACGTCGGGGCCACTACGAAGCGCGGCGCGGTTCTTCCGGCATGCCAGCGGGCGGCGGATGATGCTCAGGGAGCCGTCGGTGCGGGTGCGGGAGAACGCGGCGGAGCAGCTGGAGGCACGTCAAAGTAACTGGGTGTTCTCGAAGCCGGTGGTGATACTGGATGTCGTTTGGAACTTGGCATTTGTGGCTAGCGGGATTGTCGTTTTGGGGCTGAGCGTTGAGGAGAAGCCTTCGGTGCCTTTGAGGGTGTGGATTGGCGGGTACTTGCTTCAAGGTGCATTTCACTGTGTGCGTGTGACTCTTAAGTACCGAAGATACATGCAAACGCAAGCACGTTCAGCGTCCGAAGGCCAGTATCAAAATGGAATTTCTTGGGAAAGAGGTGTAGATTTTAATTCTAGTTCTGGGAGTGATATTGGCGATGCAAATGATTCTGCCGACGAACAGGATCAGGAAGGATACAGCATCAGAAAGCGCATGGATTCTGCAAATACTATGTTTTCATTCATCTGGTGGCTTCTTGGATTTTATTGGATTACTACTGGTGGCCAGAACTTGACCCAAGATGCCCCTCAGCTTTACTGGCTTTGTATCACCTTCCTTGCTATCGACATTGTAATTGTTTTGATCTGCGTGGTTGTGGCATGCCTTGTTGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCATTTTTGTCAGTGGTGGCAGATAAGGAAGGGGCAACCAAGGAAGAAATCAATCAGTTGCCGAAATACAAGTTCAGAAGGGCAGATGGACATAAGCTTGATGTTGATGGTGATGATGCCCAAGCTTCATCTTGTAAAGGAATAATGACCGAATGTGACAGCGATACACCTGCGGAACATGTTCTTTCCACGGAAGACGCAGAGTGCTGCATCTGCCTGTGTCCCTATGAGGATGGGGCTGAACTAAGAGAACTTCCATGCAGCCACCATTTTCACACGGACTGCATCGACAAGTGGTTGCACATCAATGCTAACTGCCCTCTCTGCAAGTTCAACGTTCATTCTGGAAACCATTCGCAAGTTTGA 1155 0.5013 MLSTTSLPSALPDSAVDPSPLLRYSVSDQLLRRTSGPLRSAARFFRHASGRRMMLREPSVRVRENAAEQLEARQSNWVFSKPVVILDVVWNLAFVASGIVVLGLSVEEKPSVPLRVWIGGYLLQGAFHCVRVTLKYRRYMQTQARSASEGQYQNGISWERGVDFNSSSGSDIGDANDSADEQDQEGYSIRKRMDSANTMFSFIWWLLGFYWITTGGQNLTQDAPQLYWLCITFLAIDIVIVLICVVVACLVGIAVCCCLPCILAFLSVVADKEGATKEEINQLPKYKFRRADGHKLDVDGDDAQASSCKGIMTECDSDTPAEHVLSTEDAECCICLCPYEDGAELRELPCSHHFHTDCIDKWLHINANCPLCKFNVHSGNHSQV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0073 384 Pfam Ring finger domain 331 373 IPR001841 -
Prci13g0073 384 CDD RING-H2_EL5-like 331 372 - -
Prci13g0073 384 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Prci13g0073 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 379 IPR013083 -
Prci13g0073 384 SMART ring_2 332 372 IPR001841 -
Prci13g0073 384 PANTHER TARGET OF ERK KINASE MPK-1 49 379 - -
Prci13g0073 384 SUPERFAMILY RING/U-box 324 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0073 Prci-Chr13 531488 535487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0073 12 383 C3H Transcription Factor Family AT1G68070 44.297 1.51e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0073 - - cave:132188308 458.373