Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0072 ATGTTAAGTACAACCTCGTTGCCTTCAGCTCTGCCAGATTCCGCCGTAGACCCCTCACCCCTTCTTCGTTACTCCGTCTCCGATCAATTGCTCCGACGGACGTCGGGGCCACTACGAAGCGCGGCGCGGTTCTTCCGGCATGCCAGCGGGCGGCGGATGATGCTCAGGGAGCCGTCGGTGCGGGTGCGGGAGAACGCGGCGGAGCAGCTGGAGGCACGTCAAAGTAACTGGGTGTTCTCGAAGCCGGTGGTGATACTGGATGTCGTTTGGAACTTGGCATTTGTGGCTAGCGGGATTGTCGTTTTGGGGCTGAGCGTTGAGGAGAAGCCTTCGGTGCCTTTGAGGGTGTGGATTGGCGGGTACTTGCTTCAAGGTGCATTTCACTGTGTGCGTGTGACTCTTAAGTACCGAAGATACATGCAAACGCAAGCACGTTCAGCGTCCGAAGGCCAGTATCAAAATGGAATTTCTTGGGAAAGAGGTGTAGATTTTAATTCTAGTTCTGGGAGTGATATTGGCGATGCAAATGATTCTGCCGACGAACAGGATCAGGAAGGATACAGCATCAGAAAGCGCATGGATTCTGCAAATACTATGTTTTCATTCATCTGGTGGCTTCTTGGATTTTATTGGATTACTACTGGTGGCCAGAACTTGACCCAAGATGCCCCTCAGCTTTACTGGCTTTGTATCACCTTCCTTGCTATCGACATTGTAATTGTTTTGATCTGCGTGGTTGTGGCATGCCTTGTTGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCATTTTTGTCAGTGGTGGCAGATAAGCAGGAAGGGGCAACCAAGGAAGAAATCAATCAGTTGCCGAAATACAAGTTCAGAAGGGCAGATGGACATAAGCTTGATGTTGATGGTGATGATGCCCAAGCTTCATCTTGTAAAGGAATAATGACCGAATGTGACAGCGATACACCTGCGGAACATGTTCTTTCCACGGAAGACGCAGAGTGCTGCATCTGCCTGTGTCCCTATGAGGATGGGGCTGAACTAAGAGAACTTCCATGCAGCCACCATTTTCACACGGACTGCATCGACAAGTGGTTGCACATCAATGCTAACTGCCCTCTCTGCAAGTTCAACGTTCATTCTGGAAACCATTCGCAAGTTTGA 1158 0.5017 MLSTTSLPSALPDSAVDPSPLLRYSVSDQLLRRTSGPLRSAARFFRHASGRRMMLREPSVRVRENAAEQLEARQSNWVFSKPVVILDVVWNLAFVASGIVVLGLSVEEKPSVPLRVWIGGYLLQGAFHCVRVTLKYRRYMQTQARSASEGQYQNGISWERGVDFNSSSGSDIGDANDSADEQDQEGYSIRKRMDSANTMFSFIWWLLGFYWITTGGQNLTQDAPQLYWLCITFLAIDIVIVLICVVVACLVGIAVCCCLPCILAFLSVVADKQEGATKEEINQLPKYKFRRADGHKLDVDGDDAQASSCKGIMTECDSDTPAEHVLSTEDAECCICLCPYEDGAELRELPCSHHFHTDCIDKWLHINANCPLCKFNVHSGNHSQV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0072 385 CDD RING-H2_EL5-like 332 373 - -
Prci13g0072 385 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Prci13g0072 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 380 IPR013083 -
Prci13g0072 385 PANTHER TARGET OF ERK KINASE MPK-1 49 380 - -
Prci13g0072 385 SUPERFAMILY RING/U-box 325 378 - -
Prci13g0072 385 Pfam Ring finger domain 332 374 IPR001841 -
Prci13g0072 385 SMART ring_2 333 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0072 Prci-Chr13 531488 535500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0072 12 384 C3H Transcription Factor Family AT1G68070 44.444 1.85e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0072 - - cave:132188308 455.292