Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0071 ATGTTAAGTACAACCTCGTTGCCTTCAGCTCTGCCAGATTCCGCCGTAGACCCCTCACCCCTTCTTCGTTACTCCGTCTCCGATCAATTGCTCCGACGGACGTCGGGGCCACTACGAAGCGCGGCGCGGTTCTTCCGGCATGCCAGCGGGCGGCGGATGATGCTCAGGGAGCCGTCGGTGCGGGTGCGGGAGAACGCGGCGGAGCAGCTGGAGGCACGTCAAAGTAACTGGGTGTTCTCGAAGCCGGTGGTGATACTGGATGTCGTTTGGAACTTGGCATTTGTGGCTAGCGGGATTGTCGTTTTGGGGCTGAGCGTTGAGGAGAAGCCTTCGGTGCCTTTGAGGGTGTGGATTGGCGGGTACTTGCTTCAAGGTGCATTTCACTGTGTGCGTGTGACTCTTAAGTACCGAAGATACATGCAAACGCAAGCACGTTCAGCGTCCGAAGGCCAGTATCAAAATGGAATTTCTTGGGAAAGAGGTGTAGATTTTAATTCTAGTTCTGGGAGTGATATTGGCGATGCAAATGATTCTGCCGACGAACAGGATCAGGAAGGATACAGGCTTTGTATCACCTTCCTTGCTATCGACATTGTAATTGTTTTGATCTGCGTGGTTGTGGCATGCCTTGTTGGTATTGCTGTTTGCTGCTGTCTGCCATGCATACTTGCATTTTTGTCAGTGGTGGCAGATAAGCAGGAAGGGGCAACCAAGGAAGAAATCAATCAGTTGCCGAAATACAAGTTCAGAAGGGCAGATGGACATAAGCTTGATGTTGATGGTGATGATGCCCAAGCTTCATCTTGTAAAGGAATAATGACCGAATGTGACAGCGATACACCTGCGGAACATGTTCTTTCCACGGAAGACGCAGAGTGCTGCATCTGCCTGTGTCCCTATGAGGATGGGGCTGAACTAAGAGAACTTCCATGCAGCCACCATTTTCACACGGACTGCATCGACAAGTGGTTGCACATCAATGCTAACTGCCCTCTCTGCAAGTTCAACGTTCATTCTGGAAACCATTCGCAAGTTTGA 1038 0.5096 MLSTTSLPSALPDSAVDPSPLLRYSVSDQLLRRTSGPLRSAARFFRHASGRRMMLREPSVRVRENAAEQLEARQSNWVFSKPVVILDVVWNLAFVASGIVVLGLSVEEKPSVPLRVWIGGYLLQGAFHCVRVTLKYRRYMQTQARSASEGQYQNGISWERGVDFNSSSGSDIGDANDSADEQDQEGYRLCITFLAIDIVIVLICVVVACLVGIAVCCCLPCILAFLSVVADKQEGATKEEINQLPKYKFRRADGHKLDVDGDDAQASSCKGIMTECDSDTPAEHVLSTEDAECCICLCPYEDGAELRELPCSHHFHTDCIDKWLHINANCPLCKFNVHSGNHSQV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0071 345 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Prci13g0071 345 SMART ring_2 293 333 IPR001841 -
Prci13g0071 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 340 IPR013083 -
Prci13g0071 345 SUPERFAMILY RING/U-box 285 338 - -
Prci13g0071 345 PANTHER TARGET OF ERK KINASE MPK-1 49 340 - -
Prci13g0071 345 Pfam Ring finger domain 292 334 IPR001841 -
Prci13g0071 345 CDD RING-H2_EL5-like 292 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0071 Prci-Chr13 531488 535522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0071 12 344 C3H Transcription Factor Family AT1G68070 40.720 2.24e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0071 - - cave:132188308 367.081