Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0062 ATGGGTAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCAAAAAGAAGGAACGGTCTGATGAAGAAAGCTTATGAACTGTCAGTGCTTTGCGATGCTGAGGTTGCTCTTATCATTTTCTCTGGTCGTGGCAAGCTCTATGAATTCGGAAGTGCTGGTATTACCAAAACCTTGGAGAGATACCAGAGATGCACTTTTACTTCTCAAGACACCAATGTTCTCGAGCTCGAAACTCAGAGCTGGAGTCAAGAGGTGTCAAAGCTAAAGGCAAAGTACGAGTCTCTACAGAGGACTCAAAGGCATTTGCTTGGAGAAGATCTTGGACCACTGAATGTGAAAGAGCTTCAGAATCTCGAGAAACAGCTTGAGGGAGCTCTAGCTCAAGCCAGGCAAAGGAAGACGGAAATTATGATTGAACAAATGGAAGATCTTCGCAGAAAGGAACGCCATCTGGGAGACATGAATAAGCAACTTAGACTCAAGCTGGAAGCAGAGGGATATAATGTGAAGGGCATAGAAAGCTTGTGGAGCTGCCATTCTCAGTCAGGAGGAGCAGGATCGGGTGTGGCCGCATTTCCCAACTTCCCCCTGCAACCATCCCATCACACCAACCCCAACCCTCTGGACTGTTCTCCCCACCCTTTCCTGCAAATCGGGTACCACCATCAATATGTGGAAGCAGAGACGTCTAATAATGCTTCCAACAAGGCCATGCTTGCTGAAACCAACTTCATGCAGGGATGGCTTCTTTGA 777 0.4698 MGRGRVELKRIENKINRQVTFSKRRNGLMKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGITKTLERYQRCTFTSQDTNVLELETQSWSQEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTEIMIEQMEDLRRKERHLGDMNKQLRLKLEAEGYNVKGIESLWSCHSQSGGAGSGVAAFPNFPLQPSHHTNPNPLDCSPHPFLQIGYHHQYVEAETSNNASNKAMLAETNFMQGWLL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0062 258 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 FunFam MADS-box transcription factor 1 13 88 - -
Prci13g0062 258 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Prci13g0062 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Prci13g0062 258 Coils Coil 120 143 - -
Prci13g0062 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 201 - -
Prci13g0062 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci13g0062 258 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Prci13g0062 258 Coils Coil 86 106 - -
Prci13g0062 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci13g0062 258 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0062 Prci-Chr13 430034 434188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0062 1 258 MADS-box Gene Family AT2G45650 63.740 6.65e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci13g0062 K-box 7.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0062 K09264 - rcu:8258483 370.933