Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0039 ATGGCAGAAGGAGCCAGGCTCGAACGGTTCCTCCAGTGGCTACAGGCGAATGGGGTTCAACTACAAGGTTGCGACATCAAGTATTGTGATTCCCGAAAAGGGTTTGGCATCTTTTCAACTAAAGATGTTTCTGATGGGGTTCTATTGGTTGTTCCGCTAGATTTAGCAATAACTCCAATGAGAGTGTTGCAAGATCCTCTTCTTGGCCCAGAATGCAGGGCAATGTTTGAAGATGGAGAAGTAGATGACAGATTCTTGATGATTTTATTCCTGACTGTGGAACGCTTGCGTCATAATTCTTCATGGAAGCCGTACCTTGATATGCTTCCAGCGAATTTTGGAAATCCACTTTGGTTTAGTGATGACGATCTTCAAGAGCTGAGGGGAACAACTTTGTTCCGTGCTACTGAATTGCAGAAGAAAAACCTGCTGTCATTGTACGATACCAAAGTAAAGGCTTTGGTGAAGAAGATCTTGACCCTTAATGGGGATTCAGAGACTGAGGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTCTGGAGTCGTGCTTTGAACATCCCTTTTCCTCATTCTTTTGTATTTCCAAAAATGCAAGCACCTGAGAGTTTCATTTCAGTCAATGGACGTGTCAAGACTTTACTTAATGGTGAATATGTTTTCTCAGGAAGCCAGGTTAAAAAATCTGATGATGAAGTTGATGAGATGGCATGTAACACCATGCGAGGAGACCCAGTTTGGGTGGAGGGTCTTGTCCCAGGCATTGACTTTTGCAACCATGATCTGAAGCCAATAGCTACTTGGGAAGTTGACGGAATTGGATCAATCACTCATGTTCCTTCTTCCATGTACCTTCTCTCTGCTGCACAAAATCCCTTGGAGATTGGTCGAGAAATTACCATTAGTTATGGCAACAAAGGAAATGAGGAACTTCTCTATCTGTATGGTTTCGTCATCAATGATAACCCAGATGACTATCTCATGGTCCACTATCCAGCAGAAGCAATTGGTTCTATATCTTGCTCAGAATCCAAAAGTCAGCTTCTTGAAGCACAGAAGGCTGAGATGAGATGTCTTTTACCCAAGACTTTGCTGGATCATGGGTTTTTTCCAGTAGGCACCAGAAAAGGTGGGGAAAATGACGAGTGCAAGGTGGACCAAGTTTGCAATTATAGTTGGAGTGGTCAACGGAGGACACCATCTTATGCAAAGAAGCTGGTTTTTCCTGAGAAGTTTATTACAGCCTTGAGGACCATTGCCATGCAGGAGGATGAGATCTTTAAAGTTTCCTTGCTGCTGGAAGAGGATGATAGAAGTTCATTATTGGTATATAAAAGATGGAAGAAGGATTTAAGTCAAAATACAGCATTGAAGTTAGTCGATAAGGGAGTTATTCATGCTGAATAA 1410 0.4227 MAEGARLERFLQWLQANGVQLQGCDIKYCDSRKGFGIFSTKDVSDGVLLVVPLDLAITPMRVLQDPLLGPECRAMFEDGEVDDRFLMILFLTVERLRHNSSWKPYLDMLPANFGNPLWFSDDDLQELRGTTLFRATELQKKNLLSLYDTKVKALVKKILTLNGDSETEVCFEDFLWANSVFWSRALNIPFPHSFVFPKMQAPESFISVNGRVKTLLNGEYVFSGSQVKKSDDEVDEMACNTMRGDPVWVEGLVPGIDFCNHDLKPIATWEVDGIGSITHVPSSMYLLSAAQNPLEIGREITISYGNKGNEELLYLYGFVINDNPDDYLMVHYPAEAIGSISCSESKSQLLEAQKAEMRCLLPKTLLDHGFFPVGTRKGGENDECKVDQVCNYSWSGQRRTPSYAKKLVFPEKFITALRTIAMQEDEIFKVSLLLEEDDRSSLLVYKRWKKDLSQNTALKLVDKGVIHAE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0039 469 CDD SET_LSMT 30 319 - -
Prci13g0039 469 Pfam SET domain 34 305 IPR001214 GO:0005515
Prci13g0039 469 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 437 - -
Prci13g0039 469 SUPERFAMILY SET domain 6 323 IPR046341 -
Prci13g0039 469 Gene3D set domain protein methyltransferase, domain 1 4 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0039 Prci-Chr13 262800 275809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0039 1 192 NAC Transcription Factor Family AT3G56570 28.718 5.46e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci13g0039 SET 7.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0039 - - gmx:100793324 664.84