Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0022 ATGGCAGGAGCTGGAACTGACAAATCTGCTTCTGCAACTTCGGGTCCTTCGTCATCCAATAACAGCAACAAGGCCACGATGCTCAAACGCTTCATAGGGGTTCGCCAGAGGCCGTCGGGACGATGGGTCGCCGAGATCAAGGACTCTTCTCAGCACGTTCGGCTCTGGCTGGGGACCTACGACACCCCAGAGGAGGCGGCCCAAGCCTATGACGAGGCGGCCCGGGCCCTTCGTGGCGACAACGCCAGAACCAACTTCGTCTCAGCCGCCTCAAACGAGGACCTATCGAAGCAAAGTGGACTGAGTTTTGCTTCTTTGAAAGCCAAACTGAGCAAGAATCTTCAGAGCATAATGGCCAGGGCGAGCGATGGCGGCGCAGCAGTATTCGGCCAAATCCCTTGTGATATGGTGGAGAAAGTGGTGCAACCTAGCATAATAGTGCCGCCCGTGGGGAATCAACCTGGTGCATTTAGTTCCTGGGAGAGCTCGACCTTATCGGATTGCAGCCCCGAGTGGGTTGGGTTCCGGCACTCGGAAGGTTCAGATGCCGACGGCGAGCAATTAGGGCGTAATCTGGAGCAGCTGTTGGGGTGGGTGGATAGTCCGGATCATGGTAACCATAATATGTATGGGAGCAGTTTAATTAATGGAAGCGATGAACAGGATGAAGGATCGAGGAGCAAGAGGTTTAAGGTGTCTTCTTCGGTTCTCGTGCCTCCAACTTTCAGCGGGCCTCCAGATAACAGTGCTTTTGGATCTCCATATAATAATAATAATATTGGCGGCAAGTGA 792 0.5366 MAGAGTDKSASATSGPSSSNNSNKATMLKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFVSAASNEDLSKQSGLSFASLKAKLSKNLQSIMARASDGGAAVFGQIPCDMVEKVVQPSIIVPPVGNQPGAFSSWESSTLSDCSPEWVGFRHSEGSDADGEQLGRNLEQLLGWVDSPDHGNHNMYGSSLINGSDEQDEGSRSKRFKVSSSVLVPPTFSGPPDNSAFGSPYNNNNIGGK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0022 263 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Prci13g0022 263 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Prci13g0022 263 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Prci13g0022 263 MobiDBLite consensus disorder prediction 208 263 - -
Prci13g0022 263 SUPERFAMILY DNA-binding domain 30 86 IPR016177 GO:0003677
Prci13g0022 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 157 - -
Prci13g0022 263 MobiDBLite consensus disorder prediction 1 26 - -
Prci13g0022 263 MobiDBLite consensus disorder prediction 7 26 - -
Prci13g0022 263 FunFam ethylene-responsive transcription factor RAP2-11 29 88 - -
Prci13g0022 263 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Prci13g0022 263 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Prci13g0022 263 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Prci13g0022 263 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Prci13g0022 263 MobiDBLite consensus disorder prediction 230 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0022 Prci-Chr13 206532 207412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0022 30 92 AP2-EREBP Transcription Factor Family AT5G19790 66.667 3.08e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g0022 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0022 - K09286 pcin:129290888 508.834