Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0021 ATGGCAGGGTTTGCTTTTGTTTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTCGAGTGGACCAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAGATCTTCTACTAATATGAGACCATCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACACGAGGACAAGGGATCTAGAGAGGCACTTTGATCCCTATGGAAAAATATTGAATATCAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCACTAGAGCATTGGAGGCAACTAACTTGAGTAAGTTGTTAGATCGGGTTATAACAGTGGAGTATGCAATAAGAGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGAAGAGGCCGTGACATATCCCCTGATGGGAGATATGGTCGTGGTAGATCACTTAGCCCTTATCATAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCGACTTCCAGACCAGAACCAAGGGGAAGCCCTAAGTATGAACGGAATGAAAGCCCATTAAATGGAAGATATGACAGCCGATCACCACCACCCCGCCGTCAGTCCCGATCCCCAGGAGAAGTTGAATAG 669 0.441 MAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDATRALEATNLSKLLDRVITVEYAIRDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYHRGRGSPDYGHGSNPTSRPEPRGSPKYERNESPLNGRYDSRSPPPRRQSRSPGEVE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0021 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 133 IPR000504 GO:0003723
Prci13g0021 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 41 IPR000504 GO:0003723
Prci13g0021 222 Gene3D - 56 142 IPR012677 -
Prci13g0021 222 MobiDBLite consensus disorder prediction 136 156 - -
Prci13g0021 222 SUPERFAMILY RNA-binding domain, RBD 3 135 IPR035979 GO:0003676
Prci13g0021 222 SMART rrm1_1 63 129 IPR000504 GO:0003723
Prci13g0021 222 Gene3D - 1 55 IPR012677 -
Prci13g0021 222 MobiDBLite consensus disorder prediction 136 222 - -
Prci13g0021 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 126 IPR000504 GO:0003723
Prci13g0021 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 30 IPR000504 GO:0003723
Prci13g0021 222 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 77 - -
Prci13g0021 222 FunFam Serine/arginine-rich splicing factor RS31 54 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0021 Prci-Chr13 197850 202230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0021 3 138 Eukaryotic Initiation Factors Gene Family AT1G49760 26.712 2.94e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0021 K12893 - gmx:100797778 368.622