Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0020 ATGAGGCCTGTCTTTTGTGGAAACCTGGATTTTGATGCGCGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGACAGAGTGGACTTGAAGTCTGGGTTTGCTTTTGTTTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTCGAGTGGACCAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAGATCTTCTACTAATATGAGACCATCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACACGAGGACAAGGGATCTAGAGAGGCACTTTGATCCCTATGGAAAAATATTGAATATCAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCACTAGAGCATTGGAGGCAACTAACTTGAGTAAGTTGTTAGATCGGGTTATAACAGTGGAGTATGCAATAAGAGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGAAGAGGCCGTGACATATCCCCTGATGGGAGATATGGTCGTGGTAGATCACTTAGCCCTTATCATAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCGACTTCCAGACCAGAACCAAGGGGAAGCCCTAAGTATGAACGGAATGAAAGCCCATTAAATGGAAGATATGACAGCCGATCACCACCACCCCGCCGTCAGTCCCGATCCCCAGGAGAAGTTGAATAG 768 0.4427 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDATRALEATNLSKLLDRVITVEYAIRDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYHRGRGSPDYGHGSNPTSRPEPRGSPKYERNESPLNGRYDSRSPPPRRQSRSPGEVE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0020 255 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Prci13g0020 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Prci13g0020 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Prci13g0020 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Prci13g0020 255 Gene3D - 1 77 IPR012677 -
Prci13g0020 255 Gene3D - 78 219 IPR012677 -
Prci13g0020 255 MobiDBLite consensus disorder prediction 169 255 - -
Prci13g0020 255 SMART rrm1_1 96 162 IPR000504 GO:0003723
Prci13g0020 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Prci13g0020 255 MobiDBLite consensus disorder prediction 169 189 - -
Prci13g0020 255 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Prci13g0020 255 SUPERFAMILY RNA-binding domain, RBD 83 172 IPR035979 GO:0003676
Prci13g0020 255 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Prci13g0020 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Prci13g0020 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0020 Prci-Chr13 197850 202483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0020 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 2.96e-09 55.5