Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1397g0001 ATGGAATATACTGTCTATGGAGAATCTTCGTCCAGCTTTGATGCTTTAAATTCAAGTCCGAAATGGAAATATGATGTTTTCTTGAGCTTTGCAGGAAAAGACACGCGGTTGAAGTTTACAGATCACTTATATGATGCTTTCAATAGGAGTGGGATTAGAGCTTTTAGGGATGATGAAGGAATAGAGAGAGGGGAAGATTTATCCAAGCAACTGCTTCAAGCAATTGAGGATTCTCTGTGTGCAGTTGTTGTTCTTTCTGAAAATTACGCAAATTCAAAATGGTGTTTGAATGAACTCCAAAAGATTCTTGAATGTAGGAATAAATTGGGTCAACGAGTTTTTCCAATTTTCTATGATGTAGATCCATCTGATATAAGGTATCAGAGAAAGAGTTTTGGAGAAGCTTTGGCTAAACATGAAGAGAGATTCAGAAATAACAACCACAATCACAAAGGTCTTGGTTGGTTTTCAGCATTCGCGAACCTCGGTTTGGGCTTCAAACAACGTTTTTGGCTGCCAAACACTCATTCTAACATGTTCAAACTGCAAACTTGGAAAAAAGCTCTGTTTGAAATTGGCAACTTGTCCGGTTGGGATACCAGGGGTCGGCGTGAATCAGATTTGATAAAAAATATTGTTGGAGGGATATGGACTTATTTATGTTCTAAATTACCAACTTATGGTGATAATCTAGTAGGGATTGAATCAAAAATGGTTGATATGATGTCATACCTGGAAATTGGGTTGGATGACGTCTATTTTGTAGGATTGTGGGGTATGGGCGGTATCGGTAAAACAACTCTTGCTAGAGTTGTTTACGATAAAATCTCACATAAATTTGATATGTGTTGCTTCCTTGCTAATGTTAGAGAAACCTCACAAAGAGAAGGTCTAGTTTCTTTACATAGAAAGCTTCTTTCTCATCTCAAAATAAAGAACATGGAAATTGATGATGTGTATGAAGGAAAGAAGATATTACAAAATCTTTTTTTCAATAAAAAGGTTCTTCTTGTCCTTGATGATGTAGATCATATGAAACAAATTCAAATTTTGGCACAAAGTCCAAAGTGGTTTGGTAGAGGAAGTAGAGTAATCATAACAACAAGAGATAGCCACTTGCTCACCACATCTAAAGTGCAAAGAATATATGAGGTGAAAATCATGAAGGAAGAAGAATCTCTTCAACTCTTATCTAACAAAGCATTCAACCAAGATCATCCTAAAATAGATTATTTGGAGCTGTCTATCTCTGTGGTTAAATATACAGGAGGTCTTCCTTTGGCACTTAATGTTTTGGGTTCTTTTCTTTGTGGAAGAAGTAAAGCTGAATGGAGAGATACTTTGGATAGATTGAAGCAAATTCCAGATAATGATATTCTTCAAATACTTAAAATAAGTTATGATGGCTTAAATGAGGAAGAAAAGACAATATTTTTGGATATTGCTTGTTTTTTCAAGGGATGGAGGAAAGTTGAAGTAGCCCAAATTTTGGAAGATTGTGATCTTCACCCAACAATTGGAATGAAAGTTTTGATGGAAAAAGCTCTACTAATTGAAAAGAAAGATCTTTTGGGACGCTGTGTTTTAGAAATGCATGATTTACTTGAAGACTTGGGGAGGTATATTATTTGTCAAGAATCTCCCAATGCTGGCCAGCGTAGTAGATTGTGGGAGTTAGAGGACATTAATGAAGTATTGAAAAATAAGAAGGGATCTAAAGCAATGCAAGCTATTGTGTATCGGTATTTAGGTGATGATGTAGTAGTACATCCTCAAGTCTTTTCAGAGACGAGTAATATTAGACTACTCATCTTATCAAGGGATTTCAAGCCTTTTGGTGGTCTCAAATGTCTTCCTAGTGCATTAAAAGTTTTTCAATGGCGAGAATTTCCTTTAGAAACTCTCCCATTTGAAGCTCCGTTGGATAAACTTGTTGATATTCAAATGCATAAGAGCAAAATAAAGAAACTTTGGAATGGGGTACAGTTTATGAAAAAGTTGAAACGCATTGATCTGAGTTATTCCCGATACTTGAACGAAACTCCAGACTTCTCAGAAGTTCCAAATTTAGAAAAACTAATTCTTGAAGGTTGCTCATCTCTTGTCAAGGTTCATCCCTCACTTGGAAAACTGCACAAGGTTGTTCTGGTGAACTTGTGCAACTGCAAGAATCTCAAAAGCCTTCCAAGAAAATTGGAAATGAACTCTCTGATAGAATTAAATCTTTTTGGGTGCTCCAAAGTTGAACTGCTCCCAGAGTTTGGGGAAGGTATGAAAAATTGTCATATCTTGAAATGA 2298 0.3599 MEYTVYGESSSSFDALNSSPKWKYDVFLSFAGKDTRLKFTDHLYDAFNRSGIRAFRDDEGIERGEDLSKQLLQAIEDSLCAVVVLSENYANSKWCLNELQKILECRNKLGQRVFPIFYDVDPSDIRYQRKSFGEALAKHEERFRNNNHNHKGLGWFSAFANLGLGFKQRFWLPNTHSNMFKLQTWKKALFEIGNLSGWDTRGRRESDLIKNIVGGIWTYLCSKLPTYGDNLVGIESKMVDMMSYLEIGLDDVYFVGLWGMGGIGKTTLARVVYDKISHKFDMCCFLANVRETSQREGLVSLHRKLLSHLKIKNMEIDDVYEGKKILQNLFFNKKVLLVLDDVDHMKQIQILAQSPKWFGRGSRVIITTRDSHLLTTSKVQRIYEVKIMKEEESLQLLSNKAFNQDHPKIDYLELSISVVKYTGGLPLALNVLGSFLCGRSKAEWRDTLDRLKQIPDNDILQILKISYDGLNEEEKTIFLDIACFFKGWRKVEVAQILEDCDLHPTIGMKVLMEKALLIEKKDLLGRCVLEMHDLLEDLGRYIICQESPNAGQRSRLWELEDINEVLKNKKGSKAMQAIVYRYLGDDVVVHPQVFSETSNIRLLILSRDFKPFGGLKCLPSALKVFQWREFPLETLPFEAPLDKLVDIQMHKSKIKKLWNGVQFMKKLKRIDLSYSRYLNETPDFSEVPNLEKLILEGCSSLVKVHPSLGKLHKVVLVNLCNCKNLKSLPRKLEMNSLIELNLFGCSKVELLPEFGEGMKNCHILK 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1397g0001 765 Gene3D - 220 383 IPR027417 -
Prci1397g0001 765 PRINTS Disease resistance protein signature 254 269 - -
Prci1397g0001 765 PRINTS Disease resistance protein signature 662 678 - -
Prci1397g0001 765 PRINTS Disease resistance protein signature 329 343 - -
Prci1397g0001 765 PRINTS Disease resistance protein signature 422 436 - -
Prci1397g0001 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 481 IPR027417 -
Prci1397g0001 765 Pfam NB-ARC domain 252 454 IPR002182 GO:0043531
Prci1397g0001 765 Gene3D Ribonuclease Inhibitor 586 764 IPR032675 -
Prci1397g0001 765 Pfam TIR domain 23 171 IPR000157 GO:0007165
Prci1397g0001 765 ProSiteProfiles TIR domain profile. 22 220 IPR000157 GO:0007165
Prci1397g0001 765 Gene3D - 16 219 IPR035897 -
Prci1397g0001 765 Pfam Leucine Rich Repeat 643 662 IPR011713 -
Prci1397g0001 765 SMART till_3 23 195 IPR000157 GO:0007165
Prci1397g0001 765 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 149 IPR035897 -
Prci1397g0001 765 SUPERFAMILY L domain-like 531 760 - -
Prci1397g0001 765 Gene3D - 387 471 IPR042197 -
Prci1397g0001 765 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 753 IPR044974 GO:0006952
Prci1397g0001 765 FunFam Disease resistance protein (TIR-NBS-LRR class) 389 471 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1397g0001 24 763 WRKY Transcription Factor Family AT4G12020 29.829 4.59e-83 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1397g0001 - - pcin:129300043 1542.32