Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1387g0007 ATGACGACTGGTACCCTTTGCGGGAACAAGACATCGCGGAAGAGACGAAGAAGTGGGAGTGACTCTGTCATAGACACTCTTGAGAAGTGGAAGAAGTACAACAGTGACGTTGAGTTTGTCAAAAATGGAGCAAAGAAAGCGAGTCAGAGAGTTCCAGCGAAAGGCTCGAGAAAGGGATGCATGAGAGGCAAAGGTGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGCGAACCCATTACTGGAAATCACAATAATGTGGGAAACAAGAAACCAAATCGGTTATGGCTTGGCACCTTCTCTACTGCACTTGAAGCTGCCCTTGCTTATGATGAAGCAGCCAGGGCCATGTACGGTCCTTGTGCTCGCCTGAACTTTCCTGAGTATAATATGGAAGGAGGAGCAGAAGAAGAAGAACCCACATGCTCTAATGAGGAAACAGAGAAGAAACATGATATTGTTCTGGTGAAGAGTGAAGAAGAAACAGAGGAGGAATGGAATCCAAGAGCTAGTTGTGAGGATTCTAGTGTCATTGGAAGTGAAGCTTCCTTTGAGAAGAAGCAAATGGAGGAAATGACGTCCGAGATTCTGGGATTTTGTGCATCTGACCACTCTCAAAACGAGGAATATAAATCTTCTATAGAGAGAAAATTTGGAGATGAGGGTTTCAGCATTCCTGGCAATGGAAACTCCGTGTTTGAAGAAAAAGACATGGATGAGTGGCAGAGTGGTCATTTGCCTGTGTATCTGAATAGCATGAAGGAGGCAGACCTGGAAGTGGGTTATTATGACTACAGTTTCTTGAGACCTGATTATGACTTTGGCTTATTGGAAGAGAAAAACTTACTTGGCTTGTGGTTTCCACACATAGCTTCTTAA 918 0.4455 MTTGTLCGNKTSRKRRRSGSDSVIDTLEKWKKYNSDVEFVKNGAKKASQRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITGNHNNVGNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPEYNMEGGAEEEEPTCSNEETEKKHDIVLVKSEEETEEEWNPRASCEDSSVIGSEASFEKKQMEEMTSEILGFCASDHSQNEEYKSSIERKFGDEGFSIPGNGNSVFEEKDMDEWQSGHLPVYLNSMKEADLEVGYYDYSFLRPDYDFGLLEEKNLLGLWFPHIAS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1387g0007 305 MobiDBLite consensus disorder prediction 1 21 - -
Prci1387g0007 305 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
Prci1387g0007 305 MobiDBLite consensus disorder prediction 44 68 - -
Prci1387g0007 305 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Prci1387g0007 305 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Prci1387g0007 305 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
Prci1387g0007 305 SMART rav1_2 73 146 IPR001471 GO:0003700|GO:0006355
Prci1387g0007 305 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 206 - -
Prci1387g0007 305 CDD AP2 72 141 IPR001471 GO:0003700|GO:0006355
Prci1387g0007 305 FunFam Ethylene-responsive transcription factor 2 72 141 - -
Prci1387g0007 305 ProSiteProfiles AP2/ERF domain profile. 73 140 IPR001471 GO:0003700|GO:0006355
Prci1387g0007 305 Pfam AP2 domain 72 132 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1387g0007 8 160 AP2-EREBP Transcription Factor Family AT2G40340 50.641 3.84e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1387g0007 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1387g0007 - K09286 pcin:129300022 602.823