Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1385g0001 ATGGCGGGGAAAGAAGAAAACCGTATATTTGTGGGAGGCTTGTCTTGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTAGTCGTTGCGGGAAAGTTATTGAATGCCAGATCATGTTGGAAAGGGACACAGGTCGTCCACGTGGATTTGGGTTTATCACATTTGCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGACCGCATTATCTCTGTCAACAGGGCGCAGCCCAAGATGGGGTCAGATGACCTAGATCATGGTTACTCATCAGGTGGCAGAGGAAACTATGGGGTGGGAGGCAGGGTCGGACAGGATGACTGCTTCAAATGCGGGCGACCTGGCCACTGGGCCCGAGATTGCCCTCTGGCAGGGGGAGGTCGTGGTGGGGGTTCACTTTCTTCACGACCTAGGTTTGGAGGTGCTGGTGGACATGGGGATCGCCTTGGTGAACGTGATCGATTCATTGATGATCGTTATGATGGAGGACGTTTTGGAGACAGGGAACGCTTTGACAGCCGAGATAACAAATATGGCAACCGTGATCACTATTATAGTGACAGGGCTAGCGGAGATCGGTTTGCAAATGACTCGTATGGTGGTTCAGACCGTTACCCACAAAATAGTTATGGGAAAGATAGAGCCTATGACAGATATGGCAGTGCAAGAAGTAATGATAGGTATGGAAGTGGAGTGCCAGCACGAGATCAAGGAAGGAGTTTTAGGGGCGGCAGACGTGGTGGTCCTTATGACCGTCCAAGCCGGGGTGGTCGTCCGTCTTCGTTTGACCGCTACTGA 819 0.5177 MAGKEENRIFVGGLSWDVTERQLEHAFSRCGKVIECQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNRAQPKMGSDDLDHGYSSGGRGNYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGSLSSRPRFGGAGGHGDRLGERDRFIDDRYDGGRFGDRERFDSRDNKYGNRDHYYSDRASGDRFANDSYGGSDRYPQNSYGKDRAYDRYGSARSNDRYGSGVPARDQGRSFRGGRRGGPYDRPSRGGRPSSFDRY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1385g0001 272 MobiDBLite consensus disorder prediction 246 272 - -
Prci1385g0001 272 MobiDBLite consensus disorder prediction 133 272 - -
Prci1385g0001 272 SUPERFAMILY Retrovirus zinc finger-like domains 99 135 IPR036875 GO:0003676|GO:0008270
Prci1385g0001 272 Gene3D - 111 137 - -
Prci1385g0001 272 Gene3D - 1 110 IPR012677 -
Prci1385g0001 272 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676|GO:0008270
Prci1385g0001 272 ProSiteProfiles Zinc finger CCHC-type profile. 115 129 IPR001878 GO:0003676|GO:0008270
Prci1385g0001 272 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Prci1385g0001 272 MobiDBLite consensus disorder prediction 152 197 - -
Prci1385g0001 272 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Prci1385g0001 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Prci1385g0001 272 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 264 - -
Prci1385g0001 272 SMART rrm1_1 8 81 IPR000504 GO:0003723
Prci1385g0001 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Prci1385g0001 272 FunFam glycine-rich RNA-binding protein RZ1C 1 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1385g0001 9 88 C2H2 Transcription Factor Family AT2G19380 40.000 3.62e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1385g0001 - - gmx:100809519 367.851