Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1377g0001 ATGAAGCAAGACTCCCGATTACTATCTGTTTGGGAAGGCCAATCTCATGATGCATTCGTTCCAACTTCGGCTTCGGAAGCTCAATCTGGTTCTCACTTCCAGACGATGCTCGATGCTCAGGTCTCTGGGAATGGTAGTTCTAGCATGGTTGGAGGTGCTGTGGTGAATGGTTATATTGTTTATACTCGACAAAGGAAGGCTCGGCGTTTGTGTGATGGGTCTTCTGAGAACGAAAAGTTTAAGAGGCTAAAGACTTCTGTAGAACCGCAAACAAATGCGCACATTCCAGGGATGGAAGGTGGAGGCGGTGTGGAGGTAGATAATGTAGAACATGGAATAGAAATTGGAGTCAGTTGCAATGTGGAGAAGCCTAAAAGCTACAATGAGCTAGAGAACGAGCCCAGACAAGATCGTGCTGGGGAAGGTGGCTTCAATGGTGTTTCTGTAGTAATGTCTAACGGTGACGGTGTGCAGAAAGATGCTGGAGTTAAGACATTGAAGCGCTATTCTCGATCAGCTTTGAAAACAAAGGTTCGCTCTTCTGATAAGGCGGGGAGTGTTTCAGAATCTTCCCAGGCTGAAAATACTAAATCAGACGGGAAGGTGAACGCTGCCCCCATCGCATTAACAGCTCCAAGAAACAAATTGGAATTGAAGATGTCGAAAAAGATTGTGCTCAACAAGAAGCCTATGACCGTCAAGGAGCTCTTCGACACTGGTCTACTGGATGGTGTTCCTGTAGTTTATATGGGCGGGAAGAAGGCTTCGGGACTTCGAGGCATTATTAAAGATGGGGGAATATTGTGTTCATGCTGTCTTTGCAATGGACGCAAGGTTATTCCACCTTCCCAATTTGAGATTCATGCATGCAAAGCGTATAAGCGAGCGGCACAATACATTTGCCTGGAAAATGGGAAGAGCCTGCTTGAGCTATTGAGAGCGTGCAGAGGAGCTCCCTTACATACTCTGGAGGCGACAATACAAAGCGTTGTTTGTTCTCCACCTGATGAAAAGTATTTCACTTGTAAAATGTGCAAGGTATGTTTCCCTCCTTCATGTGTGGAAAGAGTCGGGTCTATATGCAGTTCTTGCAAGGAGACCAAGGAATCTCAAGACAGTTCTATTGATAAAGTGGGCAAAAGAGTCAGGTCTCCTAGAGCGCTTTCTGTTTCTAAGCAATCTGATATTTCTGAGAAGCGTATCTCTTCACAGATTAAGAGACACTGGAAGAAAAGGACAAAGTCGCCAAAATGGGTTAGCCGTGCAAAGTCTTCCAAGAATTCTTCAGTGACTATCCTATCACGAAAGAAGAGTCTTTGGAAGATGAAAAAGAAGTCCTCCAAATTGTCAGTGAAATTGAAGACTGCAAGAACTACTTCAAATTCAATGCCTTCATCTTCACCAAACAAGAGTCACTGGAGGATCACTAAGAAGCACCAGCAGTTGCATAAGTTAGTCTTTGAGGAAGGTGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCACGTGGGCAGAAACTGCTCGAGGGTTACAAAAAGGGCTTTGGAATAATGTGTCGATGCTGCAACTCTGAGGTCAGCCCCTCGCAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCTATATCTCTCTCAAAAGATCGCAAATACTCTGCAAAGGATAATGATGATTTATGCATTATTTGTTGGGATGGTGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCTTTTCATAAAGAATGTGCATCTCTGTTGAGCATTCCGCGTGGTAATTGGTACTGCAAGTTTTGCCAAAACATGTTCCAAAGAGAAAGATTTGTGGCACACAATGTCAATGCTGTGGCAGCTGGGAGAGTTGAAGGAGTTGATCCTATTGAGCAGATAACCAAAAGATGTGTGCGCATTGTCGAAGATGTTGATACTGAGCTCAATGGATGTGCTTTATGCAGGGCTTGTGACTTCAGCAAATCAGGATTTGGTCCACGAACAATAATAATCTGTGATCAGTGTGATAAAGAATTTCATGTTGGCTGCTTGAGGGATCATAAAATGTCATTTTTGAAGGAATTGCCAGAAGGGGATTGGTTTTGTTGCCATGATTGCTCAACCATACATTCTACTTTTCAGAACCTCCTGGTTGGGGGGGCTGAGAAACTTCCAGAACCTCTCTTGGATGTTATAAAGAAAAAGCAAGAGGAAAAAGGTTTAGAATCCCTTAGTGATATTGATGTGAAATGGAGGCTTCTTAGGGGCAAAATTGCTTCTCCTGAAACTAGGCCATTTCTTTTGCAGGCTGTCTCAATCTTTCATGAATGCTTTGACCCTATAGTTGATTCAATTACTGGACGCAATCTTATTACGGCCATGATATATGGAAGGACTGTTCGGAGACAAGAGTTTGGAGCGATGCATTGTGCAATATTAATGGTCAATTCAACTGTGGTATCCGCTGCCTTGCTTCGAATTTTTGGAAGTGATTTTGCAGAGCTCCCACTAGTTGCAACTCGTAGTGTTAACCATGGAAAGGGGTACTTCCAAATGCTATACTCCTGCATCGAGAAATTGCTGACTTCTTTAAACGTGAAGAACCTTGTGTTGCCAGCTACCGCTACTGCAGAGTCCATTTGGATTGAGAAATTCGGGTTCACGAAGATGACAGCAGATGAGCTTAGCAACTACAGAAAGAACTACCAGCAGATGGTGATATTTCAGGGGACATCCATGCTTCATAAAATGCTTGCTCCGTGTCCGGATATCAAAAATTCTTCATGA 2829 0.4383 MKQDSRLLSVWEGQSHDAFVPTSASEAQSGSHFQTMLDAQVSGNGSSSMVGGAVVNGYIVYTRQRKARRLCDGSSENEKFKRLKTSVEPQTNAHIPGMEGGGGVEVDNVEHGIEIGVSCNVEKPKSYNELENEPRQDRAGEGGFNGVSVVMSNGDGVQKDAGVKTLKRYSRSALKTKVRSSDKAGSVSESSQAENTKSDGKVNAAPIALTAPRNKLELKMSKKIVLNKKPMTVKELFDTGLLDGVPVVYMGGKKASGLRGIIKDGGILCSCCLCNGRKVIPPSQFEIHACKAYKRAAQYICLENGKSLLELLRACRGAPLHTLEATIQSVVCSPPDEKYFTCKMCKVCFPPSCVERVGSICSSCKETKESQDSSIDKVGKRVRSPRALSVSKQSDISEKRISSQIKRHWKKRTKSPKWVSRAKSSKNSSVTILSRKKSLWKMKKKSSKLSVKLKTARTTSNSMPSSSPNKSHWRITKKHQQLHKLVFEEGGLPDGAEVAYYARGQKLLEGYKKGFGIMCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIICWDGGDLLLCDGCPRAFHKECASLLSIPRGNWYCKFCQNMFQRERFVAHNVNAVAAGRVEGVDPIEQITKRCVRIVEDVDTELNGCALCRACDFSKSGFGPRTIIICDQCDKEFHVGCLRDHKMSFLKELPEGDWFCCHDCSTIHSTFQNLLVGGAEKLPEPLLDVIKKKQEEKGLESLSDIDVKWRLLRGKIASPETRPFLLQAVSIFHECFDPIVDSITGRNLITAMIYGRTVRRQEFGAMHCAILMVNSTVVSAALLRIFGSDFAELPLVATRSVNHGKGYFQMLYSCIEKLLTSLNVKNLVLPATATAESIWIEKFGFTKMTADELSNYRKNYQQMVIFQGTSMLHKMLAPCPDIKNSS 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1377g0001 942 ProSiteProfiles Zinc finger PHD-type profile. 574 619 IPR019787 -
Prci1377g0001 942 ProSiteProfiles Zinc finger PHD-type profile. 665 723 IPR019787 -
Prci1377g0001 942 Pfam PHD-finger 577 618 IPR019787 -
Prci1377g0001 942 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 820 906 IPR016181 -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 179 199 - -
Prci1377g0001 942 Coils Coil 942 942 - -
Prci1377g0001 942 PANTHER AUTOIMMUNE REGULATOR 123 931 - -
Prci1377g0001 942 SMART PHD_3 576 617 IPR001965 -
Prci1377g0001 942 SMART PHD_3 667 721 IPR001965 -
Prci1377g0001 942 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 563 640 - -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 452 471 - -
Prci1377g0001 942 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 723 IPR013083 -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 374 423 - -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 126 151 - -
Prci1377g0001 942 SUPERFAMILY FYVE/PHD zinc finger 657 720 IPR011011 -
Prci1377g0001 942 Gene3D - 772 931 - -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 450 472 - -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 404 419 - -
Prci1377g0001 942 Pfam Tify domain binding domain 510 560 IPR032308 -
Prci1377g0001 942 Pfam Tify domain binding domain 260 315 IPR032308 -
Prci1377g0001 942 SUPERFAMILY FYVE/PHD zinc finger 563 621 IPR011011 -
Prci1377g0001 942 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 651 IPR013083 -
Prci1377g0001 942 ProSitePatterns Zinc finger PHD-type signature. 577 616 IPR019786 -
Prci1377g0001 942 CDD PHD1_AIRE 576 616 - -
Prci1377g0001 942 MobiDBLite consensus disorder prediction 172 206 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1377g0001 174 930 PHD Transcription Factor Family AT2G36720 50.630 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1377g0001 - - pcin:129313599 1186.02