Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci134g0001 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGACAGAGTCTCAGTGTTTCATCGTCTGGGTCAGTGAGTATACCGTCAGGACCTGTATATTTTCCCACCGAGGATGAGTTCAGAGACCCGTTGGAATATATTTATAAGATTAGACCTGAGGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAACCCCCATTTGCTTTGGATCTAGATTTTTTTACTTTCCCCACTAAAACACAGGAAATTCACAAGTTACAGGCTCGTCCTGCAGCTTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCAATGCGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCAAACTGTTTAATGCTGTTAAGAGATATGGTGGATATGATAAGGTTGTGAAGGAAAAGAAATGGGGGGATGTTTCACGGTTTGTAGGGCCAAGTAGAAAAATTACCGACTGTGCAAAGCACGTCCTATCTCAGTTGTACTCTGAACATTTGTATGATTATGAGAATTTCTATAGTCGGCTGAATCAAGAGACAGGCAAGAAAGGCATGCTTGAGGATGAACAAAGTGATCATGGCATTCGATCTTCAGGATCCAAGAGGATAAGAAGAAGTGTTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGGAGGAAGAACATGACCAGATTTGTGAGCAATGTAGAAGTGGTTTGCATGGGGACGTAATGCTTTTGTGTGATAGGTGTGACAAGGGCTGGCATATATATTGTCTGTCTCCACCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGAGACAGCTTTGGTTTTGTGCCTGGTAAGCAATACACTTTGGAAGCCTTTAGACGTGTGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCTAGGGTGCAGATAGAGAAGAAATTTTGGGAAATTGTAGAGGGATTGGTTGGTGAAGTTGAGGTTATGTATGGAAGTGATTTGGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGATCAGAAACCAGAGCCAATTGATTCAAAATTATGGGATGAGTACTCTTCTAACCCATGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCAATGCTTCGAGCTGTTCATCATAATATCACGGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTGAAGCCGGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCAGATCTGCTTTTTCAGCTTGTAACAATGTTAAACCCATCTGTTTTGCAAAAAAATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTCATTACCTTTCCCAGATCTTACCATGGCGGTTTTAATCTTGGTTTAAATTGTGCAGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTCGCCCAGTACAGTGACATTGATACCAGAGCATCTCCTTATTTGAAGAAAGAATTGCTTCGCATATATGATAAAGAGAAATCATGGAGAGAAAAACTCTGGAAAAATGGTATTGTCAAATCATCTTGCATGGCTTCTCGGCAATATCCTCAATATGTAGGAACTGAAGAGGATCCGTCATGCATTATTTGCCAGCAATATCTATATCTTTCAGCTGTTGTGTGCAGCTGCAGGCCATCTTCTTTTGTATGTCTGGAGCACTGGGAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTCTATCGTCACTCACTTGCAGAATTGCATGACTTGGGACTTTCTGTGGACAATTATACTTCTGATGATAAAGCACTGTTTAGGAATATAAGAAAGCACTCTTCATGTCCGGGCACTTTGACAAAAAAGGTAAAAGGTGGTTCCATTACTTTCTCGCAGCTTGCTACACAATGGCTTCTGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAGCGATGCTGTTGTTTCTGTGCTGAGGGAAGCTGAACAGTTTCTTTGGGCCGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAGTTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTTTGACAGAGAGAAAGTGCACCTAGAATTTGTTGATCAGCTGCTAACATTTAATTTTGCACCATGCAATGAGCCTGCTTATCATAAGTTGAAGGAATATACAGAAGGGGCTGTGTTGTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATGTCTGAGTTGGAATCATTGCATTCTAGAGTTTGTGGCTATCCACTCTACGTGAAAGATGTTGAGAAGTTGGAAAGGAAAATTTCTTCAACTAAGGTGTGGCTGCAGAGAGCCAGAAGCTGCATCTCCATCAAACATCCTGCTGCAGTAGAGCTTGATGTTCTTTACAAGTTGAAGTCAGAGATTATGGAGCTTCAAGTACTGCTTCCAGAGATGGACGTGATTCAGAATATATTAAGTCAAGCAGAATCTTGTGGTTCAAAATGTAGTGAGATGTTAGAAGGTCCCATGAATCTGCAGAATGTCAAGATGCTTCTTAAGGAATGGGACGGCTTTATGGTTGATGTACCTGAGGTGAAGCTTTTGCGGAAATATTATAAGGATGCTGTTTCATGGGTTTCCAACTTTAACCATATTGTAGGAACAACACATGAACGGGAGGACCAACATAATGTCATCGATGAATTGAAGAGTATTTTAGGAGATGGTTTATCATTAAAACTTGCAGTTGATGAGTTGCCATTGGTTGAGACTGAGCTGCAGAAAGCTCTTTGTCGGGAAAAGGCTCTACAGGCATATAAATCTAGGTTGTCTCTGGAATTTGTTCAGGAAGTGATGAAGGAGGCCAGACTGCTACAACTTGAGGGAGAGAAATTATTTGTTGGTTTATCTGGTTTACTTGCTGTTGCCATACCTTGGGAGGAAAGGAAAGTTCTAATTTCACATAAGGCTTCCTTCTCTGACTTCGGGGACATCATCAGGGCCTCAGAGAGCATATTTTTGATTCTTCCTTCCCTTGATGTGAAGGCAGCACTGCTGGAAGCTAATTCATGGCTAATGAATTCAAAACAATTTTTGGTTTCTTCTACTTGTCCATCAGATTCTCCACTGAAAGTTGAGGAGCTTCAGTCAAAGCTTCTTAAAATATCTTTTGAAGAAGTGAGGATGCTTGAAATAGTTCTGCAAAACTGCAAAAAATGGGAGTGTGAGGCATGTTCTCTATTGGAAGATGCCCAGCATACTTTTGAATTGGATGACGTTGTTCATGGAATAAGCAGTGGCCTAATGTCCCAAGTTGAAGGTTGA 3618 0.4132 MGKGRPRAVEKGVAGQSLSVSSSGSVSIPSGPVYFPTEDEFRDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDFFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDQCGKKSRKKIVFEGEELDLCKLFNAVKRYGGYDKVVKEKKWGDVSRFVGPSRKITDCAKHVLSQLYSEHLYDYENFYSRLNQETGKKGMLEDEQSDHGIRSSGSKRIRRSVDCLKVKDCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLEAFRRVADRSRRRWFGPGPVSRVQIEKKFWEIVEGLVGEVEVMYGSDLDTSVFGSGFPRSTDQKPEPIDSKLWDEYSSNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQKNGVPVYSIIQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQYSDIDTRASPYLKKELLRIYDKEKSWREKLWKNGIVKSSCMASRQYPQYVGTEEDPSCIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTVKLRLLYRHSLAELHDLGLSVDNYTSDDKALFRNIRKHSSCPGTLTKKVKGGSITFSQLATQWLLRSSEILQNPYSSDAVVSVLREAEQFLWAGPEMNSVRDMVKSLIEAQKWAEGIRDCLRKIEAWLCDQDFDREKVHLEFVDQLLTFNFAPCNEPAYHKLKEYTEGAVLLSQEINIALSKCSKMSELESLHSRVCGYPLYVKDVEKLERKISSTKVWLQRARSCISIKHPAAVELDVLYKLKSEIMELQVLLPEMDVIQNILSQAESCGSKCSEMLEGPMNLQNVKMLLKEWDGFMVDVPEVKLLRKYYKDAVSWVSNFNHIVGTTHEREDQHNVIDELKSILGDGLSLKLAVDELPLVETELQKALCREKALQAYKSRLSLEFVQEVMKEARLLQLEGEKLFVGLSGLLAVAIPWEERKGXLISHKASFSDFGDIIRASESIFLILPSLDDXKAALLEANSWLMNSKQFLVSSTCPSDSPLKVEELQSKLLKISFEEVRMLEIVLQNCKKWECEACSLLEDAQHTFELDDVVHGISSGLMSQVEG 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci134g0001 1207 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Prci134g0001 1207 SUPERFAMILY Clavaminate synthase-like 366 564 - -
Prci134g0001 1207 SMART bright_3 99 193 IPR001606 GO:0003677
Prci134g0001 1207 SMART cupin_9 381 547 IPR003347 -
Prci134g0001 1207 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Prci134g0001 1207 SUPERFAMILY ARID-like 81 196 IPR036431 GO:0003677
Prci134g0001 1207 SMART ARID_2 95 188 - -
Prci134g0001 1207 CDD ARID 100 188 - -
Prci134g0001 1207 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 1158 - -
Prci134g0001 1207 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Prci134g0001 1207 Gene3D Cupin 269 553 - -
Prci134g0001 1207 Pfam PLU-1-like protein 894 1173 IPR013637 -
Prci134g0001 1207 Pfam ARID/BRIGHT DNA binding domain 103 188 IPR001606 GO:0003677
Prci134g0001 1207 Pfam jmjN domain 32 65 IPR003349 -
Prci134g0001 1207 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Prci134g0001 1207 SMART PHD_3 243 289 IPR001965 -
Prci134g0001 1207 FunFam Predicted protein 349 552 - -
Prci134g0001 1207 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Prci134g0001 1207 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Prci134g0001 1207 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Prci134g0001 1207 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Prci134g0001 1207 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Prci134g0001 1207 Pfam PHD-finger 243 290 IPR019787 -
Prci134g0001 1207 SMART JmjN_1 30 71 IPR003349 -
Prci134g0001 1207 CDD PHD_RSF1 244 288 - -
Prci134g0001 1207 Gene3D Cupin 13 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci134g0001 31 95 JUMONJI Transcription Factor Family AT1G08620 55.072 4.51e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci134g0001 PLU-1 6.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci134g0001 K11446 - gmx:100789512 1862.04