Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci1341g0005 | ATGGCGAAAGGAGAAGGTACTCTTCTCGTGAGTTCGAAAGCAGAGTTGAAACGGAAGGAGAAGCAACAAAAGAAGGCCAAGTCTGGCGGATTTGAGTCCTTGGGTCTTAGCCCCAATGTGTACAGAGGAATCAAACGCAAAGGTTACAAGGTGCCCACTCCAATTCAGAGGAAAACGATGCCGATCATTCTTTCTGGTGCCGACGTCGTTGCCATGGCTCGCACTGGGTCTGGTAAAACCGCTGCCTTTCTCGTCCCCATGCTTGAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCTACTAGAGACTTGGCGCTTCAGACTTTGAAGTTCACCAAAGAGCTTGGCCACTTCACAGATCTTCGTGTTAGTTTATTAGTTGGGGGTGACAGTATGGAAAGTCAGTTTGAGGAATTAGCTCAAAATCCTGACATCATAATTGCAACACCTGGTAGGCTCATGCACCATTTGTCTGAAGTTGATGACATGTCATTGCGTACTGTGGAATATGTTGTTTTTGACGAGGCAGATTGTTTATTCGGCATGGGTTTTGCTCAGCAGTTGCATCAAATTCTTACACAGCTAGGTGAGAACCGTCAAACCTTGCTTTTCAGTGCTACATTACCTAGTGCACTTGCTGAATTTGCAAAGGCTGGCTTGCGTGATCCTCAGCTTGTTCGTCTGGATTTGGAAACTAAAATCAGCCCTGACCTGAAGGTTGCTTTTTTCACCTTGAGGCAGGAAGAAAAATATGCAGCATTACTGTATTTGATTAGGGAGCAAATTAGTTCTGATCAGCAGACACTAATATTTGTATCCACAAAACATCACGTGGAATTTCTTAACACATTGTTTAAAGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCACGCAAGATTCATATATCAAGGTTCAGGGCAAGAAAGACAATGTTATTGATTGTGACAGATGTTGCTGCTCGGGGCATAGATATTCCATTACTTGATAATGTTATCAATTGGGACTTCCCTCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGAGCAGGTCGAGCTGGTGCCGCCTTTTCTTTTGTGACTTCGGAGGATATGCCATATCTTTTGGATCTTCATCTGTTTCTCTCAAGACCAATCAGAGCTGCTCCAACTGAAGAAGAGGTTCTGCAGGATATTCATGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAAGGGAGAAACTGTTTATGGTCGTTTTCCCCAGAAAGTCTTAGACCTTGTTTCAGACAGAGTTCAGGAAACCATTGATGCTTCTGCTGAACTAACATCATTGCAGAAGACCTGCCAAAATGCATTTCGTTTATACTCAAAGACAAAACCTTTACCTTCAAAGGAGTCTATTAGAAGAGTAAAAGATTTACCACGTGAGGGGTTGCATCCAATTTTCAAGAATGTATTGGAAACAGGGGAATTAATGGCACTTGCTTTTTCAGAGAACTTGAAAAATTTTAGGCCAAAGCAGACTGTTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTACAAGGACCTGCTAGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCTATTCATGAGAATGTTATAAATTTAGTCCATGAGCAGCGTTCTAAGAATAAGACAAAACAGGAGGAAATTCAATTGGATATCACTCCAGCGGAAAAAGGGAAAAAAGCAGTGTCTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGAATACTACATAAGTTCAATACCCCAAAATCATCACATGGAAGCAGGTCTTTCAGTCAGGGCTAAAGAAGACTTTTCTTCAAACAGATTGGAATCAGCTGTCCTCGATCTAGTTGCAGATGACAGTGCTGGCATTCAGAAACAGAAGTCAGTGTATCATTGGGATAAGAAAAGTAAAAAGTACATCAAGCTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAACAACGGAGGGCGGTGCAAAAGTGAAGGCCACCAAGACTGGTATCTATAAGAAGTGGAAAGAACGTTCACACAATAAGATAGGTCTTAAGGGGATGGACAATGAAGGTGATTCTCATGGGCCCACGAGTTCAGCAGGGCACTTCCGAGGCGGTCCTCGAAAATTTAAAGGCGGCAAGAAGCAGCATTCAGTGCCAAATGCTCATGTGCGTTCAGAGATCAAAGATCTTGATCAAATTCGAAAGGAAAGGCAGAAGAAAGCCAACAGACTTTCATATCTGAAGAGCCAGTCTACTAAGAAGGGTAAGAAATTTGGTAAAGATGGGAAAAAAGGAAAGGGTGGTGGTGGACATGGAAAGAAAGGAAAGGGAAGGTAA | 2397 | 0.4268 | MAKGEGTLLVSSKAELKRKEKQQKKAKSGGFESLGLSPNVYRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLVPMLERLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAQQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKVAFFTLRQEEKYAALLYLIREQISSDQQTLIFVSTKHHVEFLNTLFKEEGIEPSVCYGDMDQDARKIHISRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRAGAAFSFVTSEDMPYLLDLHLFLSRPIRAAPTEEEVLQDIHGAFSKIDQAIAKGETVYGRFPQKVLDLVSDRVQETIDASAELTSLQKTCQNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSENLKNFRPKQTVLEAEGEAAKSKHLQGPASQWVDVMKKKRAIHENVINLVHEQRSKNKTKQEEIQLDITPAEKGKKAVSGSKRKPQSFKDEEYYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKITTEGGAKVKATKTGIYKKWKERSHNKIGLKGMDNEGDSHGPTSSAGHFRGGPRKFKGGKKQHSVPNAHVRSEIKDLDQIRKERQKKANRLSYLKSQSTKKGKKFGKDGKKGKGGGGHGKKGKGR | 798 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci1341g0005 | 798 | CDD | SF2_C_DEAD | 252 | 360 | - | - | |
Prci1341g0005 | 798 | Gene3D | - | 247 | 476 | IPR027417 | - | |
Prci1341g0005 | 798 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 60 | 233 | IPR014001 | - | |
Prci1341g0005 | 798 | Gene3D | - | 7 | 236 | IPR027417 | - | |
Prci1341g0005 | 798 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 29 | 57 | IPR014014 | GO:0003724 | |
Prci1341g0005 | 798 | MobiDBLite | consensus disorder prediction | 739 | 763 | - | - | |
Prci1341g0005 | 798 | CDD | DEADc_DDX54 | 29 | 234 | IPR033517 | - | |
Prci1341g0005 | 798 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 99 | 385 | IPR027417 | - | |
Prci1341g0005 | 798 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
Prci1341g0005 | 798 | SMART | DBP10CT_2 | 634 | 696 | IPR012541 | GO:0003723|GO:0003724|GO:0005524|GO:0005634 | |
Prci1341g0005 | 798 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Prci1341g0005 | 798 | MobiDBLite | consensus disorder prediction | 700 | 798 | - | - | |
Prci1341g0005 | 798 | SMART | ultradead3 | 48 | 248 | IPR014001 | - | |
Prci1341g0005 | 798 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 257 | 406 | IPR001650 | - | |
Prci1341g0005 | 798 | SMART | helicmild6 | 286 | 367 | IPR001650 | - | |
Prci1341g0005 | 798 | Pfam | Helicase conserved C-terminal domain | 256 | 367 | IPR001650 | - | |
Prci1341g0005 | 798 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 15 | 699 | - | - | |
Prci1341g0005 | 798 | Pfam | DEAD/DEAH box helicase | 53 | 220 | IPR011545 | GO:0003676|GO:0005524 | |
Prci1341g0005 | 798 | Pfam | DBP10CT (NUC160) domain | 634 | 695 | IPR012541 | GO:0003723|GO:0003724|GO:0005524|GO:0005634 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci1341g0005 | 31 | 400 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 32.527 | 1.74e-58 | 203 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci1341g0005 | K14808 | - | gmx:100806274 | 1249.19 |