Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1341g0004 ATGGCGAAAGGAGAAGGTACTCTTCTCGTGAGTTCGAAAGCAGAGTTGAAACGGAAGGAGAAGCAACAAAAGAAGGCCAAGTCTGGCGGATTTGAGTCCTTGGGTCTTAGCCCCAATGTGTACAGAGGAATCAAACGCAAAGGTTACAAGGTGCCCACTCCAATTCAGAGGAAAACGATGCCGATCATTCTTTCTGGTGCCGACGTCGTTGCCATGGCTCGCACTGGGTCTGGTAAAACCGCTGCCTTTCTCGTCCCCATGCTTGAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCTACTAGAGACTTGGCGCTTCAGACTTTGAAGTTCACCAAAGAGCTTGGCCACTTCACAGATCTTCGTGTTAGTTTATTAGTTGGGGGTGACAGTATGGAAAGTCAGTTTGAGGAATTAGCTCAAAATCCTGACATCATAATTGCAACACCTGGTAGGCTCATGCACCATTTGTCTGAAGTTGATGACATGTCATTGCGTACTGTGGAATATGTTGTTTTTGACGAGGCAGATTGTTTATTCGGCATGGGTTTTGCTCAGCAGTTGCATCAAATTCTTACACAGCTAGGTGAGAACCGTCAAACCTTGCTTTTCAGTGCTACATTACCTAGTGCACTTGCTGAATTTGCAAAGGCTGGCTTGCGTGATCCTCAGCTTGTTCGTCTGGATTTGGAAACTAAAATCAGCCCTGACCTGAAGGTTGCTTTTTTCACCTTGAGGCAGGAAGAAAAATATGCAGCATTACTGTATTTGATTAGGGAGCAAATTAGTTCTGATCAGCAGACACTAATATTTGTATCCACAAAACATCACGTGGAATTTCTTAACACATTGTTTAAAGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCACGCAAGATTCATATATCAAGGTTCAGGGCAAGAAAGACAATGTTATTGATTGTGACAGATGTTGCTGCTCGGGGCATAGATATTCCATTACTTGATAATGTTATCAATTGGGACTTCCCTCCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGAGCAGGTCGAGCTGGTGCCGCCTTTTCTTTTGTGACTTCGGAGGATATGCCATATCTTTTGGATCTTCATCTGTTTCTCTCAAGACCAATCAGAGCTGCTCCAACTGAAGAAGAGGTTCTGCAGGATATTCATGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAAGGGAGAAACTGTTTATGGTCGTTTTCCCCAGAAAGTCTTAGACCTTGTTTCAGACAGAGTTCAGGAAACCATTGATGCTTCTGCTGAACTAACATCATTGCAGAAGACCTGCCAAAATGCATTTCGTTTATACTCAAAGACAAAACCTTTACCTTCAAAGGAGTCTATTAGAAGAGTAAAAGATTTACCACGTGAGGGGTTGCATCCAATTTTCAAGAATGTATTGGAAACAGGGGAATTAATGGCACTTGCTTTTTCAGAGAACTTGAAAAATTTTAGGCCAAAGCAGACTGTTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTACAAGGACCTGCTAGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCTATTCATGAGAATGTTATAAATTTAGTCCATGAGCAGCGTTCTAAGAATAAGACAAAACAGGAGGAAATTCAATTGGATATCACTCCAGCGGAAAAAGGGAAAAAAGTGTCTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGAATACTACATAAGTTCAATACCCCAAAATCATCACATGGAAGCAGGTCTTTCAGTCAGGGCTAAAGAAGACTTTTCTTCAAACAGATTGGAATCAGCTGTCCTCGATCTAGTTGCAGATGACAGTGCTGGCATTCAGAAACAGAAGTCAGTGTATCATTGGGATAAGAAAAGTAAAAAGTACATCAAGCTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAACAACGGAGGGCGGTGCAAAAGTGAAGGCCACCAAGACTGGTATCTATAAGAAGTGGAAAGAACGTTCACACAATAAGATAGGTCTTAAGGGGATGGACAATGAAGGTGATTCTCATGGGCCCACGAGTTCAGCAGGGCACTTCCGAGGCGGTCCTCGAAAATTTAAAGGCGGCAAGAAGCAGCATTCAGTGCCAAATGCTCATGTGCGTTCAGAGATCAAAGATCTTGATCAAATTCGAAAGGAAAGGCAGAAGAAAGCCAACAGACTTTCATATCTGAAGAGCCAGTCTACTAAGAAGGGTAAGAAATTTGGTAAAGATGGGAAAAAAGGAAAGGGTGGTGGTGGACATGGAAAGAAAGGAAAGGGAAGGTAA 2394 0.4265 MAKGEGTLLVSSKAELKRKEKQQKKAKSGGFESLGLSPNVYRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLVPMLERLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAQQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKVAFFTLRQEEKYAALLYLIREQISSDQQTLIFVSTKHHVEFLNTLFKEEGIEPSVCYGDMDQDARKIHISRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRAGAAFSFVTSEDMPYLLDLHLFLSRPIRAAPTEEEVLQDIHGAFSKIDQAIAKGETVYGRFPQKVLDLVSDRVQETIDASAELTSLQKTCQNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFKNVLETGELMALAFSENLKNFRPKQTVLEAEGEAAKSKHLQGPASQWVDVMKKKRAIHENVINLVHEQRSKNKTKQEEIQLDITPAEKGKKVSGSKRKPQSFKDEEYYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKITTEGGAKVKATKTGIYKKWKERSHNKIGLKGMDNEGDSHGPTSSAGHFRGGPRKFKGGKKQHSVPNAHVRSEIKDLDQIRKERQKKANRLSYLKSQSTKKGKKFGKDGKKGKGGGGHGKKGKGR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1341g0004 797 CDD SF2_C_DEAD 252 360 - -
Prci1341g0004 797 Gene3D - 247 476 IPR027417 -
Prci1341g0004 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 233 IPR014001 -
Prci1341g0004 797 MobiDBLite consensus disorder prediction 738 762 - -
Prci1341g0004 797 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 29 57 IPR014014 GO:0003724
Prci1341g0004 797 MobiDBLite consensus disorder prediction 699 797 - -
Prci1341g0004 797 CDD DEADc_DDX54 29 234 IPR033517 -
Prci1341g0004 797 MobiDBLite consensus disorder prediction 12 27 - -
Prci1341g0004 797 MobiDBLite consensus disorder prediction 1 31 - -
Prci1341g0004 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 385 IPR027417 -
Prci1341g0004 797 Gene3D - 7 236 IPR027417 -
Prci1341g0004 797 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 15 698 - -
Prci1341g0004 797 SMART DBP10CT_2 633 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Prci1341g0004 797 SMART ultradead3 48 248 IPR014001 -
Prci1341g0004 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 257 406 IPR001650 -
Prci1341g0004 797 SMART helicmild6 286 367 IPR001650 -
Prci1341g0004 797 Pfam Helicase conserved C-terminal domain 256 367 IPR001650 -
Prci1341g0004 797 Pfam DEAD/DEAH box helicase 53 220 IPR011545 GO:0003676|GO:0005524
Prci1341g0004 797 Pfam DBP10CT (NUC160) domain 633 694 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1341g0004 31 400 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 1.71e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1341g0004 K14808 - gmx:100806274 1243.8