Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1334g0003 ATGATTGATCTTTTGATCGAGAGGGAGATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAGCAGCGAGGCAAGTGACGTTCTCAAAGAGGAAAAAAGGGCTTTTCAAGAAAGCGAAGGAACTTGCTACGCTCTGTGAAGCTGAGATTGGTCTCATGGTCTTTTCTTCCACCGGAAAGCTCTACGACTATGCCAGCTCAAGTATGCAGCAGATAACTCTGAGACATGATATGCATTTAGGCATGCACAGATCAGATCAACCTTGTATTGATTTGCAGATTGGAAGTGAAAGCTACAATAAGCTGAGCCATGAAATTGAAAAAAGGACTCATGAACTGAGGCAATTGAATGGAGACGAGTTGCAAGATTCCACAATTCAAGAATTACAAAAACTAGAGGAACTGCTTGAAACGGGTTTGATGCGTGTTTCAAAGGCAAAGGATAAAGCAATGATAGATGAGACCTTCGAACTCAAGAGAAAGGGTAAGCAGCTAATGGAAGAGAACAGGAGATTGAAACAGGTTACACTAGAACAAGGACAACCATATGACTCTGTGATCTCGTCCAGCTCATCTGATACTCCTCAACACTTCAAAGATTCTGATACCTCTCTCAAGTTGGGGTTTTATTGA 639 0.4131 MIDLLIEREMTRKKIEIKKIDNIAARQVTFSKRKKGLFKKAKELATLCEAEIGLMVFSSTGKLYDYASSSMQQITLRHDMHLGMHRSDQPCIDLQIGSESYNKLSHEIEKRTHELRQLNGDELQDSTIQELQKLEELLETGLMRVSKAKDKAMIDETFELKRKGKQLMEENRRLKQVTLEQGQPYDSVISSSSSDTPQHFKDSDTSLKLGFY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1334g0003 212 Coils Coil 101 121 - -
Prci1334g0003 212 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 SUPERFAMILY SRF-like 11 88 IPR036879 GO:0003677|GO:0046983
Prci1334g0003 212 Gene3D - 24 95 IPR036879 GO:0003677|GO:0046983
Prci1334g0003 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 ProSiteProfiles K-box domain profile. 94 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci1334g0003 212 Pfam K-box region 99 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci1334g0003 212 Coils Coil 131 151 - -
Prci1334g0003 212 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 175 - -
Prci1334g0003 212 Coils Coil 160 180 - -
Prci1334g0003 212 CDD MADS_MEF2_like 12 78 IPR033896 GO:0000977|GO:0045944
Prci1334g0003 212 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Prci1334g0003 212 MobiDBLite consensus disorder prediction 188 212 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1334g0003 10 211 MADS-box Gene Family AT2G22540 42.373 1.90e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci1334g0003 K-box 5.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1334g0003 - - qsu:111985104 206.838