Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1334g0001 ATGTCTCGTTGCTTTTTAATCTTTCCACTTTCAGACTTCAGAGTCTGGGTAAAGCTCTGGTTTTTTCCCCCCTGGGATTATCAAAAGCCTAACCCAGTAAAACCCTCATGTCTGTTTTCATTCATTTTCTTTTCTGGGTATTTTCTCAAGAACCTGAAACAATATCAGAAGGAGACAATGACGAGAAAGAAGATAGAGATAAAGAAGATCGATAACATAGCTGCGAGGCAAGTGGCGTTCTCAAAAAGAAGAAAAGGTCTTTTCAAGAAAGCGAAGGAACTTGCTACGCTCTGTGAAGCTGAGATTGGTCTCATGGTCTTTTCTTCTACTGGAAAGCTCTACGACTATGCTAGCTCAAGGTCTCTTTCTTCTCTCTGA 378 0.4074 MSRCFLIFPLSDFRVWVKLWFFPPWDYQKPNPVKPSCLFSFIFFSGYFLKNLKQYQKETMTRKKIEIKKIDNIAARQVAFSKRRKGLFKKAKELATLCEAEIGLMVFSSTGKLYDYASSRSLSSL 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1334g0001 125 PRINTS MADS domain signature 97 118 IPR002100 GO:0003677|GO:0046983
Prci1334g0001 125 PRINTS MADS domain signature 82 97 IPR002100 GO:0003677|GO:0046983
Prci1334g0001 125 PRINTS MADS domain signature 62 82 IPR002100 GO:0003677|GO:0046983
Prci1334g0001 125 SUPERFAMILY SRF-like 60 120 IPR036879 GO:0003677|GO:0046983
Prci1334g0001 125 SMART madsneu2 60 119 IPR002100 GO:0003677|GO:0046983
Prci1334g0001 125 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 69 116 IPR002100 GO:0003677|GO:0046983
Prci1334g0001 125 ProSiteProfiles MADS-box domain profile. 60 120 IPR002100 GO:0003677|GO:0046983
Prci1334g0001 125 Gene3D - 72 125 IPR036879 GO:0003677|GO:0046983
Prci1334g0001 125 PANTHER SERUM RESPONSE FACTOR HOMOLOG 62 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1334g0001 60 125 MADS-box Gene Family AT2G14210 63.636 2.36e-25 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci1334g0001 SRF-TF 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1334g0001 - - pcin:129299892 257.299