Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1330g0001 GAATTTTCAAAGTATGCTGCATCACATTTTCGTCAAGCCTTTTTCTCAGTGGCACAAAGTACCTCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTCAGATTATACTGTACAGAAAACAATGTCTCACCTTCAAACAGCATGAAGAGCAGAAGCAAGCGTGAGCCGCAGATGTTTGGTGACCCTCCTCACATTGATATTACTCCTTTTGAAGCAGACATGAGGGAAGAAAACTCACCTGAGACTATTTCTGCACTGAAGATTTATGATGGAGTCAACATGAGAGTTCTTCTGTGTGGAGTTCCCTGCATGCTGGTAGACTTGCTTATTGGATCATTGGAGGACGGACTCAATGCTCTCCTGTGTACAGAAATACGTGGATGTAAACTTCACAACCGGACAAGTGCTATACCACACCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCACTCTTGGTGTCTGGTAGCGCAGATACATGCTTTAATGATCAGCTTTTGGAGAACTATATAAAAAAGGAGCTGATTGAGAAGAGTCAACTAGTTCAGGCATCACCTAATTGTGAACAAAGCAACTTACCTTCCTCCGAGCCTCGAAGGTCAGCCTCGATAGCTTCTGGGGCTAGTGTATTTGAAGTTTGCTTGCAGGTCCCTACATGGGCTTCACTGGTTCTGAGACAGCTTGCACCAGAAGTGTCGTACCGCAGCCTGGTTATGCTGGGAGTAGCCAGTGTTCAAGGATTGCCTGTTGCATCATTTAAAAAAGTTGATGCGGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCAGAAAAAAATTGCCTTAATGACTCCATTTCTGTTGGGCATCCTAGTTGGCTGATACCTCCACCACCTACTCGAAAAAGAACAGAGCCTTTCTTTGGAATAAAGTCTTTCAATTCTTGTAGCCTTCAAGACAGTTATAGTGGTAACAATAGACAGAAATTGAACATTGCTGCAATGAGACCAATCCCTCAATCACATCGTCAGAAGATTCAACCTTTTTCTGGATTGTCTGAGGGGGAGAGGTTTGATGGAGAACGTGGAAAATCAAATCTGCCAATGGCTCCAACAAAGCATAATGGTATAGGCTCTAATCCAGTCACAAATAGGAAATCTTCGTCAACTTCCTTTCAGGCTCAGCAGATCGTCACATTAAATCCACTACCAATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGGACCTGTTCAGAGGAGGAATTCTTGAGGGATGTAATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCACAGGGTGGTCTTTCTGAATTCCCTGAAGCCATTCTGAATGCTAAACGCCTAGCTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGAAATCACACTTTGACTAATAGAATGACAGGTGTTGGCAATACACTTAAAAGACATTATGAAACTTATCTTCTAGAGTATGAACTGGCTCATGATGACGTAGACGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGTGATTGGGTGAATTGTGGGATATGCGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGTCAAGGACTTGGCGCATTTAAGGACTATGCTAAAACTGATGGGCTAGAGTACGTTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCCCAGAAAACTTCAAACGGATATTAA 1806 0.4391 EFSKYAASHFRQAFFSVAQSTSSHTWDAFQLALASFRLYCTENNVSPSNSMKSRSKREPQMFGDPPHIDITPFEADMSXEENSPETISALKIYDDXVNMRVLLCGVPCMLVDLLIGSLEDGLNALLCTEIRGCKLHNRTSAIPHQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENYIKKELIEKSQLVQASPNCEQSNLPSSEPRRSASIASGASVFEVCLQVPTWASLVLRQLAPEVSYRSLVMLGVASVQGLPVASFKKVDAERLLYFCSRQSEKNCLNDSISVGHPSWLIPPPPTRKRTEPFFGIKSFNSCSLQDSYSGNNRQKLNIAAMRPIPQSHRQKIQPFSGLSEGERFDGERGKSNLPMAPTKHNGIGSNPVTNRKSSSTSFQAQQIVTLNPLPMKKHGCDRAPIRTCSEEEFLRDVMQFLILRGHSRLIPQGGLSEFPEAILNAKRLDXFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1330g0001 604 Gene3D - 419 532 IPR036431 GO:0003677
Prci1330g0001 604 ProSiteProfiles ARID domain profile. 427 531 IPR001606 GO:0003677
Prci1330g0001 604 Pfam ARID/BRIGHT DNA binding domain 430 527 IPR001606 GO:0003677
Prci1330g0001 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 533 589 IPR013083 -
Prci1330g0001 604 SMART ARID_2 424 527 - -
Prci1330g0001 604 SUPERFAMILY FYVE/PHD zinc finger 523 591 IPR011011 -
Prci1330g0001 604 MobiDBLite consensus disorder prediction 362 397 - -
Prci1330g0001 604 CDD PHD_ARID4_like 537 588 - -
Prci1330g0001 604 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 604 IPR042293 -
Prci1330g0001 604 SUPERFAMILY ARID-like 427 541 IPR036431 GO:0003677
Prci1330g0001 604 CDD ARID 429 527 - -
Prci1330g0001 604 MobiDBLite consensus disorder prediction 382 397 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1330g0001 2 603 ARID Transcription Factor Family AT3G43240 67.822 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci1330g0001 ARID 8.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1330g0001 - - pcin:129299877 1229.54