Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1325g0003 ATGGCTTCATCTTCTTCACCGAAAACAACCAGAAAGCCTGGGAAAGGAAGGCGCAAGATCGAGATCAAGAAAGTGGAACAAACCAGTAAGCGTTTTGTCACATTCTCGAAACGCAAATTAGGCCTCTTCCGCAAAGCCGCCGAACTATCCCTCCTCTGTGACTCCCAAATCGCCGTCGTCGTCTTCTCTCAATTCGGCAAGGTCTACACCTCCGGCTACCCCGACCCCGATGCCGTCATCCGCCGCTACCTCTCCGGTACCTCCTCCTTATCCTCAGACCCTACGTCGGTCCAAGGTCCGGAAAGAGAATCAGCGATGTCGCCACTGAGGCGGGAATACGAGGAGGCCATGAAAGTGTTTGAGGAGGAGAAGAAATCTCTGAATTCTGGGATTCTCGGGTCGGGCTACGGATCCGAGTTCTGGTGGAATCGTTCGGTTGGGGAGATGGGTTTGGAGGAAGTAGTGCAGTTCAAGGAGCGCATTGAAGAGTTGAGGCAGAATGTGATGGCCGCGGCGGAGAAGGAGAAGAAGAAAACTCAGCTGATCGATTTACCATCGCCGCCGGTGACGACGGCGGAGTCTCTGTATCTCTCTGTGTTGATGAGCGACGACACGTTTGGGATTGACCAGACATGGGAATGGGATACTTTGAATGCAAGCATCAGTGGTGATAGTTCTTCCATGGTTCCGACCAGCAGCGATGTGGGGCATTATTAA 717 0.5286 MASSSSPKTTRKPGKGRRKIEIKKVEQTSKRFVTFSKRKLGLFRKAAELSLLCDSQIAVVVFSQFGKVYTSGYPDPDAVIRRYLSGTSSLSSDPTSVQGPERESAMSPLRREYEEAMKVFEEEKKSLNSGILGSGYGSEFWWNRSVGEMGLEEVVQFKERIEELRQNVMAAAEKEKKKTQLIDLPSPPVTTAESLYLSVLMSDDTFGIDQTWEWDTLNASISGDSSSMVPTSSDVGHY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1325g0003 238 MobiDBLite consensus disorder prediction 1 21 - -
Prci1325g0003 238 PANTHER MADS BOX PROTEIN 17 169 - -
Prci1325g0003 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Prci1325g0003 238 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Prci1325g0003 238 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Prci1325g0003 238 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Prci1325g0003 238 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Prci1325g0003 238 Coils Coil 154 181 - -
Prci1325g0003 238 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Prci1325g0003 238 Coils Coil 110 130 - -
Prci1325g0003 238 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Prci1325g0003 238 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Prci1325g0003 238 MobiDBLite consensus disorder prediction 88 107 - -
Prci1325g0003 238 MobiDBLite consensus disorder prediction 88 102 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1325g0003 12 174 Type I MADS-box Gene Family AT5G60440 34.104 1.66e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci1325g0003 SRF-TF 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1325g0003 - - pcin:129319416 259.996