Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1312g0001 GTTGTTAACTATTGGGCAGAAAAAGGAATATCTGGGTTTACGGTCTTTAAGTTTCGGCTCAGGAGGCTTGATGGGCAGCCAACCTTGACAACTAACCAGGTGTATTTCATTAATGGACGTGCCCCTCAGTCCATTGCTGAAATACGAGGGCTTGTGTGTGAGGACATCACCAAAGGTGAAGAAGATGTGCCTATTCCTGCCACTAACCTGATTGACGACCCCCCAGTTGCACCCAAAGGTTTTAAATATAAAAAATCAATTTCGCTTTCAAAGAATGTAAAGCTCCCCCCTGCTGTCACTGGATGCAAGTGCAAAGGCTTATGTGTGGATCCCACATCCTGTGAATGTGCTTTACGAAATGGCTCTGATTTTCCCTATGTATCTCGTAATGGAGGGAGGTTAATTGAAGCCAAAGATGTTGTCTTTGAATGTGGACCAAATTGTGGATGTGGTCCTGGTTGTGTTAATAGAACTTCTCAGAGAGGGCCACGATATCGTCTTGAGGTTTTTCGAACTGCAAAGAAAGGATGGGCTGTTAGATCTTGGGATTTCATACCTTCGGGAGCACCAGTTTGTGAATACACAGGATTAATCAGGAGGACAGAAGATGTAGAGAATACACTCGAGAACAATTATATTTTTGAGATAGATTGTTTGCAAACGATGAAGGGCATTGGTGGAAGAGAGAGGCGATCACAAAATGAAACATCTGCAGCAGTTAAACTTTTGGACAACTATGCAAATGATGCCTCTGAATCCGCACCAGAATTTTGTATTGATGCTGGATCAATTGGAAATATTGCTCGATTTATAAACCATAGTTGTGAACCAAATTTATTTGTTCAATGTGTTTTGAGTTCACACCATGATTTAAGGCTTGCACGAGTGATGTTATTTGCTGCAGACAACATACCACCTTTGCAGGAGCTTACATATGACTATGGTTATGCCCTGGATAGTGTCTTGAGCCCTGACGGGAAAGTAAAGAAAATGACGTGTTATTGTGGAGCTGCTGACTGCAGGAAGCGACTGTTCTAA 1038 0.4239 VVNYWAEKGISGFTVFKFRLRRLDGQPTLTTNQVYFINGRAPQSIAEIRGLVCEDITKGEEDVPIPATNLIDDPPVAPKGFKYKKSISLSKNVKLPPAVTGCKCKGLCVDPTSCECALRNGSDFPYVSRNGGRLIEAKDVVFECGPNCGCGPGCVNRTSQRGPRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGLIRRTEDVENTLENNYIFEIDCLQTMKGIGGRERRSQNETSAAVKLLDNYANDASESAPEFCIDAGSIGNIARFINHSCEPNLFVQCVLSSHHDLRLARVMLFAADNIPPLQELTYDYGYALDSVLSPDGKVKKMTCYCGAADCRKRLF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1312g0001 345 ProSiteProfiles SET domain profile. 165 315 IPR001214 GO:0005515
Prci1312g0001 345 SMART PostSET_3 329 345 IPR003616 -
Prci1312g0001 345 ProSiteProfiles Post-SET domain profile. 329 345 IPR003616 -
Prci1312g0001 345 Gene3D SET domain 46 345 IPR046341 -
Prci1312g0001 345 ProSiteProfiles YDG domain profile. 1 22 IPR003105 -
Prci1312g0001 345 SMART preset_2 53 149 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci1312g0001 345 SUPERFAMILY PUA domain-like 1 57 IPR015947 -
Prci1312g0001 345 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 338 - -
Prci1312g0001 345 SUPERFAMILY SET domain 50 322 IPR046341 -
Prci1312g0001 345 Gene3D - 1 38 IPR036987 -
Prci1312g0001 345 ProSiteProfiles Pre-SET domain profile. 100 162 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci1312g0001 345 Pfam Pre-SET motif 56 157 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Prci1312g0001 345 SMART set_7 165 321 IPR001214 GO:0005515
Prci1312g0001 345 Pfam SET domain 176 315 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1312g0001 1 345 EF-hand Containing Proteins AT5G13960 65.130 7.46e-170 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci1312g0001 SET 3.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1312g0001 K11420 - pcin:129299833 704.901