Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1302g0001 ATGGAAGTAGGCAATCTTCATAAGCTTGAGGAATTAGACTTGTCACATAACAAGTTGAACGGATCAATTCCAAAAGCAATTGGTGGCTTATTAGATCTTCAATATTTGAATCTTGAAGGCAATGAGCTACATGGCCTAATCATTGATGAGATTTGTGAAATCACAAAGCTTGCCTACTTATGTTTAAGTAGAAACAAGTTTTCTGGAGGAATGCCCCCTTGTTTAGCAAACAATACCTCTTTGCGAGACCTTTACTGGGACTCTAATAAATTAATTTTAGAAATACCCCCTTCCTTTTGGAATTTGAAGGATATATTGAGGGTAAACTTATCTTCCAATATTTTAGTTGGAAATGTATCATTAAGGATTGGAAACTTAAATGCTCTTGTATTATTGGATTTGTCAAGAAATCATATTTCAGGCTTTATTCCAACTACTCTAGGTGGCCTGAATAATTTGCAAGATCTATCCCTAGCACATAACAATTTGCAAGGAAATATTCCTGAATCATTCGGAAATATGTTGAGCTTAGTAAAATTGAACCTTTCTGAGAATAATTTGTCTGGGAAGATTCCTAAATCTCTTGAGTTACTTATTATTCTTAAGTATGTCAATCTCTCTTATAACAAACTCCAAGGAGAGATTCCAAGTGGAGGAGTTTTTAAAAATTTGACTCCTAAAACTTTTATGATGAATCAAGCTCTTTGTGGCATTATCCTTTTAAGGCATAAACGACAACAAAATTCATGGGGTCTAGTTAAAAGGGATTTATCAATTTTAGGAGTGCGCAAAAGGATTTCTCATTTTGAAATCCAAGAAGCAACCAATGGATTTGATGAGAGTAACATACTTGGAAGGGGTAGTTATGGTTCTGTGTTTAAAGGAAAACTTTCTAGTGCATTGATCGTTGCAGTTAAGATCTTTAAATTTGATTCACATGTAATGTTAAGGAGCTTTGAAAAAGAATGTGACATATTGTGTAATGCACACCATCACAATTTGGTGAAGGTTATAAGCTGTTGTTCCAATGTTGATTTCAAATCTCTGGTGACGGAATTCATGCCCAATGGGAGCCTTAAAAAATGGTTATATTCTCACAACTATTTTTTAGGTTTTCTTCAAAGGTTGAACATAATGATAAATGTAGTAACTACTTTGGAATATCTCCATCATGCCTTGTTAACACCAATTGTTCATTGTGATTTGAAGCCGAGCAACATTTTATTGGATGATGAACTGGTTGCTCATGTTAGTGACTTTGGAATTTCTGAACTTTTAGGTAAAGAGGAATCTAAGACAAACACAGAGACAGTACCTACTATTGGCTATGTGGCACCTGAGTATGGATCTTTTGGAGTTGTTTCAACAAAAGTAGATGTGTATAGTTATGGAATTATGCTATTAGAGGTGTTTACAAGAAAAAGGCCCACGGAAGATATGTTTGTTGAAGGATTGAACTTGAAGAGCTGGGTAAGTGAGTCAATGCCACATGCAATAATTCAAGTCATGGATTCCAATTTATTAGAAGGAGATCAACATCATATAAAAAATATATTGACATCTACAACTTTTGTTCTTGAATTGGCCTTGAATTGTTGCACCAATCTTCCAAAAGCATGTGGCAATATGATTGATGTTGTAGTATCATTAAACAAGATGAAGGGCATGTTTTTGCGTAGACAAGCAGCATAA 1692 0.3446 MEVGNLHKLEELDLSHNKLNGSIPKAIGGLLDLQYLNLEGNELHGLIIDEICEITKLAYLCLSRNKFSGGMPPCLANNTSLRDLYWDSNKLILEIPPSFWNLKDILRVNLSSNILVGNVSLRIGNLNALVLLDLSRNHISGFIPTTLGGLNNLQDLSLAHNNLQGNIPESFGNMLSLVKLNLSENNLSGKIPKSLELLIILKYVNLSYNKLQGEIPSGGVFKNLTPKTFMMNQALCGIILLRHKRQQNSWGLVKRDLSILGVRKRISHFEIQEATNGFDESNILGRGSYGSVFKGKLSSALIVAVKIFKFDSHVMLRSFEKECDILCNAHHHNLVKVISCCSNVDFKSLVTEFMPNGSLKKWLYSHNYFLGFLQRLNIMINVVTTLEYLHHALLTPIVHCDLKPSNILLDDELVAHVSDFGISELLGKEESKTNTETVPTIGYVAPEYGSFGVVSTKVDVYSYGIMLLEVFTRKRPTEDMFVEGLNLKSWVSESMPHAIIQVMDSNLLEGDQHHIKNILTSTTFVLELALNCCTNLPKACGNMIDVVVSLNKMKGMFLRRQAA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1302g0001 563 SMART serkin_6 278 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1302g0001 563 Gene3D Phosphorylase Kinase; domain 1 245 353 - -
Prci1302g0001 563 SUPERFAMILY Protein kinase-like (PK-like) 261 548 IPR011009 -
Prci1302g0001 563 Pfam Leucine rich repeat 5 43 IPR001611 GO:0005515
Prci1302g0001 563 PRINTS Leucine-rich repeat signature 9 22 - -
Prci1302g0001 563 PRINTS Leucine-rich repeat signature 150 163 - -
Prci1302g0001 563 Pfam Protein kinase domain 279 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1302g0001 563 PANTHER OS04G0122200 PROTEIN 1 554 - -
Prci1302g0001 563 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Prci1302g0001 563 SMART LRR_typ_2 174 198 IPR003591 -
Prci1302g0001 563 SMART LRR_typ_2 6 30 IPR003591 -
Prci1302g0001 563 SMART LRR_typ_2 150 173 IPR003591 -
Prci1302g0001 563 SMART LRR_typ_2 126 149 IPR003591 -
Prci1302g0001 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Prci1302g0001 563 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Prci1302g0001 563 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 98 - -
Prci1302g0001 563 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 121 243 - -
Prci1302g0001 563 Gene3D Transferase(Phosphotransferase) domain 1 354 560 - -
Prci1302g0001 563 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 354 563 - -
Prci1302g0001 563 ProSiteProfiles Protein kinase domain profile. 278 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1302g0001 563 Gene3D Ribonuclease Inhibitor 1 244 IPR032675 -
Prci1302g0001 563 SUPERFAMILY L domain-like 3 238 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1302g0001 2 537 Receptor kinase-like Gene Family AT3G47570 37.479 1.71e-110 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci1302g0001 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1302g0001 - K13420 pcin:129299808 1125.92