Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2630 ATGGGAAGAACACCCTGCTGTGACAAGAGGGGTTTGAAGAAAGGGCCCTGGACGACTGAAGAGGATGAGATTCTCGTCGATTACATCAACAAGAATGGCGGCCATGGAAGCTGGCGTTCTCTCCCTAAGCTGGCAGGTCTGCTTCGCTGTGGGAAGAGTTGCAGGCTAAGGTGGACGAACTATCTGAGGCCTGATATAAAACGTGGTCCCTTCAGTGTTGAGGAAGAGAAGCTTGTGATACAGCTTCATGGCATCCTCGGCAACAGGTGGGCGGCGATAGCGTCACAGCTACCAGGAAGAACAGACAATGAGATAAAGAACCTGTGGAACACCCACTTGAAGAAGCGACTCTTGTGCATGGGACTCGACCCTCAAACCCACAAGCCTCTCTCTTCTTCTTCCTCATCCTCCTCCTCCTCAGCTGCCGCTTCTACTCCCTCCAATGCCTCCATCTCCACCCGCCACATGGCTCAGTGGGAGAGTGCCAGGCTCGAGGCCGAGGCTCGCCTCTCCAAAGAGACCTCTCTCTTCGCCTCTCATTCCTCTGCCGCCGACCCCGACTTCTTCCTCCGCTTGTGGAACTCCGAAGTCGGCGACGCCTTCCGCAACATAAATGTCGTCTCTTCTCCGGGATCCTCCTCTTCCACCAAGTGCACTGTTGCTACTGCTCCAACAACACGTGCTTTCATGGCTTCGTCTGACGACTCTTCCATCTCTAATGATTTGGAAGAGTCGTCAGACACTGCGTTGCAGCTCTTGTTGGATTTTCCCATTTACAATGACATGAGCTTCTTGGAAGCAAACTCTTTCATTTCTCCTCTTTAG 825 0.5297 MGRTPCCDKRGLKKGPWTTEEDEILVDYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFSVEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLCMGLDPQTHKPLSSSSSSSSSSAAASTPSNASISTRHMAQWESARLEAEARLSKETSLFASHSSAADPDFFLRLWNSEVGDAFRNINVVSSPGSSSSTKCTVATAPTTRAFMASSDDSSISNDLEESSDTALQLLLDFPIYNDMSFLEANSFISPL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2630 274 Gene3D - 70 117 - -
Prci12g2630 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Prci12g2630 274 FunFam Myb transcription factor 11 68 - -
Prci12g2630 274 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Prci12g2630 274 SMART sant 67 115 IPR001005 -
Prci12g2630 274 SMART sant 13 64 IPR001005 -
Prci12g2630 274 MobiDBLite consensus disorder prediction 126 155 - -
Prci12g2630 274 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Prci12g2630 274 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci12g2630 274 CDD SANT 16 62 IPR001005 -
Prci12g2630 274 FunFam MYB transcription factor 70 117 - -
Prci12g2630 274 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci12g2630 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Prci12g2630 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Prci12g2630 274 Gene3D - 11 68 - -
Prci12g2630 274 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci12g2630 274 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2630 Prci-Chr12 43754672 43756372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2630 1 268 MYB Transcription Factor Family AT3G61250 64.828 5.08e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci12g2630 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2630 K09422 - mnt:21400317 380.178