Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2622 ATGGATCGAGGGGACCGTATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGAGGGCTAGCTGGTGCTGGAGCGCAACCTGAGTTACATGGTTCCCCTGGTATTCGTCCCCTGTCGAATCCCAATCTGCCATTCCAACCCGGCATTGGAGGTGGTGGTGCCATTGGATCCTCATTACCATTAGAATCTTCTGCAATTTCACCTCATGGTGTCAATGTGGGTGCTCCTCCTGGTGCACCGCCTGGAGAACCTCTCAAACGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGGAGTGTATCGTTGGCATTGACTCCATCGTCATCTAGTCATCCCACTGGAGCATTGACACAAAGCCAGAAGAGAGGTAGAGGCCGTCCTCCGGGATCTGGAAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGCTTCAGCGGGGATGGGTTTTACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATAATGGCATTTTCTCAGCAAGGGCCTAGAGCTGTATGCATTTTGTCAGCAAATGGTGCTGTCTCTAATGTGACGCTTCGACAGCCTTCGAGTTCAGGTGGCACCGTCACATACGAGGGGCGTTTTGAGATATTGTGCCTATCAGGCTCTTATTTGCTCACTGAAAGTGGTGGCTCTCGCAATCGAACTGGCAGTCTTAGTGTTTCGCTAGCTAGTCCTGATGGCCGTGTCATTGGTGGCGGGGTTGGTGGATTGCTGATTGCAGCAAGTCCTGTTCAGGTGATAGTGGGGAGCTTCATATGGGGTGGATCAAAGACAAAGAGCAAGAAAAAGGAGGTTGCTGAAGAAGCAGAAGTAGCCCTGGAATCAGCATCATCATCATCATCATCAGCGGTTCATAATCCGCCTGCATTGAACAGCATTTCACCGAATCAAAATCTCAGTCAGGCTTCATCTCTGAGTTCCTGGCCGGCTCCACCTCGTCAATTGGACATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1041 0.4966 MDRGDRMALSGSASYYMQRGLAGAGAQPELHGSPGIRPLSNPNLPFQPGIGGGGAIGSSLPLESSAISPHGVNVGAPPGAPPGEPLKRKRGRPRKYGPDGSVSLALTPSSSSHPTGALTQSQKRGRGRPPGSGKKQQLASLGELMSASAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAVCILSANGAVSNVTLRQPSSSGGTVTYEGRFEILCLSGSYLLTESGGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIVGSFIWGGSKTKSKKKEVAEEAEVALESDXSSSSSSAVHNPPALNSISPNQNLSQASSLSSWPAPPRQLDMRNSHVDIDLMRG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2622 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 74 319 IPR039605 GO:0003680
Prci12g2622 347 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Prci12g2622 347 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Prci12g2622 347 FunFam AT-hook motif nuclear-localized protein 1-like 155 286 - -
Prci12g2622 347 Gene3D - 155 290 - -
Prci12g2622 347 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Prci12g2622 347 MobiDBLite consensus disorder prediction 1 141 - -
Prci12g2622 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Prci12g2622 347 MobiDBLite consensus disorder prediction 291 328 - -
Prci12g2622 347 MobiDBLite consensus disorder prediction 289 347 - -
Prci12g2622 347 MobiDBLite consensus disorder prediction 103 126 - -
Prci12g2622 347 CDD DUF296 154 268 IPR005175 -
Prci12g2622 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2622 Prci-Chr12 43663121 43668667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2622 1 347 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.657 1.59e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2622 - - gmx:100799791 434.106