Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2596 ATGCAGTTGCCTCAACAATCTCGGAAATTCAATGAATTAACTCAACATGGTCCCAACCAAGAGGCTCTTCTCAAGGGTCAAAACATTGAGCAGCAAATGCTAAATCCTGTTCATCAAGCATACCTTCAATATGCACACCAGGCTGCCCAACAAAAGTCTGCTTTGGCAGTTCATTCTCAGCAGCAGAATAAAATGGGAATGTTAGTGCCTTCATCTGTGAAAGATCAAGAAATGCGTATGGGAAATTTGAAAATGCAGGAGCTTATGTCTATGCAGGCAGTAAATCAAGCTCAAGGATCTACCTCCAGGAATGTACCCGAACAATTTTCTCGTGGGGAAAAGAAGATAGAGCAGGGACAGCAGTTAGCCCCTGATCTAAAAGGTGAGGGAAAGCCTTCAACCCAGGGACCAGCCGTGGCACAATTAATGCCTGGAAATATGATACGACCTGTGCAAACACCTGTTGATCGGCAGGGCATCCAAAATGTCATGAGCAACCAGATTGCAGTGTCTGCTCAATTACAGGCTATGCAGGCATGGGCACGTGAGCGTAATATTGATCTATCACATCCTGCAAACGCTAACTTAATTGCACAAATCTTTCCTATGAAGCAATCAAGGATAGTTTCTCAACAAAAAGCAAATGAGAGCAGCATGGGTGCTCAGTCATCACTAGTACCTGTTTCGAAGCAGCAGGTTACATCTCCAGCAGGTGCAAGTGATAGCTCTGCACATGCTAATTCATCAAGTGATGCATCTGGGCTGTCTGGTCCTGCAAAAGCCAGGCAGCTACCTGCCAACCATTTTGGCCCGCCAACAAACGTTGTTACTGCTAGCCACTCTGGTGACACAGCAGTGCAACAATTTAATAATCATAACAGAGAGTCTCAAGTATCTATGAGGCAACCTGTCTTAGTTGGAAATGGAATGCCTTCTGCACAACCCCAACAGTCTTCTACCAGCATGAATTTGGGTTCAGAACATCATTTTAATGCAAAAAATACATTATCTGGTCCAGAACCTCCACAAACGCAGTATTTAAGGAAGTTAAACCAATTGTCTTCTCAGGCATCTGGTGCTACAAATGAAGGGGGCTCAGGAAATTATGTGAAATCCCAAGGGGCACCATCTCAGATGTCTCAACAACGACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAGATACTGGCATTCAGGCGGCTCAAGAAAGGAGAGGGTACCCTTCCCCAAGAGCTTCTTCGGTCTATTGTTCCACCAACTCTTGAGCTGCAATCTCAGCAGCCAATCCATCCTTCTGGAGGACAGAATCAAGATAATTCAGCTGGAAATATCATGCCAGAACACTCAAGGCACATAGAATCTGAAGCAAAGGACTTGCAACATATCCATGCAGTTAATGGACATGGTTCTTCAAAGCATGAAACTTCTGCCAGAGATGAGAAATCCACTGTCTCAGCAGTTCATATGCAAGCTAAGCCTGTTGTGACAAAGGATCCTGCTCCAATGTTGTCTTCTCAAAGGGAAGAGCAGCAACCATTTGGTTGCTCTGTTAAGTCAGATCAGGAAAGTGAACGTGAAACTAACAGAAATCCTGTTAGGAATGAGTTGCTGTTAGACAAGGGAAAGGCCATTGCACCACAGCCTTCTGCATCTGAGTCAATGCAAAATAAGAACCCTGCACAAACAAGCACAGTTGGGCAGCCAAAAGACGTAGGATCTACAAGAAAATACCATGGACCTCTATTTGATTTCCCCTTCTTTACCAGGAAACATGACTCCTTTGGGTCGTCAATGATGGTAAGCAGCAACAATAATTTGTTGCTGGCATATGATGTCAAAGATCTTCTAGTTGACGAAGGAACGGAAGTAATTAACAAGAAAAGGGTAGAGAATTTAAAGAAGATTGAAGGTCTACTAGCAAATAACTCAGAGAGGAAGCTAATTAGGCCAGATCTTGTGATGAGGTTACAAATTGAAGAGAAAAAGCTTCATCTTAGAGGCCTTCAGGTGCGTTTAAGGGATGAGATTGATCAACAGCAGCAAGAGATAATGGCAATGCCAGATCGGCAATATCGTAAGTTTGTTAGATTGTGTGAGCGTCAACGTATGGAATTGGCTAGGCAAGTACAGGCATCTCAGAGAGCTATAAGGGAGAAGCAACTGAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCGCATTGGGCAATTCGTGATGCTCGGACTGCTCGGAATAGGGGGGTAGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAACGTAAAGATGACGACAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGTATCCCGGGTGATGCTGCTGAGAGATATTCTGTTCTTTCAACTTTCTTAACGCAGACAGAAGAGTATCTTCAGAAGCTTGGAAGTAAGATAACAGCTGCCAAGAATCAACAGGAAGTAGAGGAGGCAGGAAAAGTTGCTGCAGCTGCTGCACGGTTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGATGGTTCATCTGTCAGCAAGTATTACTCACTTGCTCATGCTGTGAATGAGAAGGTCATAAGGCAACCATCAATGTTGCGGGCTGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAATAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCCTATTTGATGGAATTCAAAGGGAACTACGGCCCACATCTCATAATAGTCCCGAATGCTGTTTTGGTTAACTGGAAGAGTGAATTTTATAACTGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAGGGAAGGATCAACGATCAAAATTATTTTCTCAAGAGGTTTGTGCGTTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAGAGGATGAAAGATAGGGATTCAGTTCTGGCACGTGATCTTGATCGATATCGTTGTCAGAGACGCCTGCTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAGCTTTGGTCCCTTTTAAACTTACTCCTTCCTGAGGTTTTTGACAATCGAAAAGCATTTCATGATTGGTTCTCGAAACCTTTTCAAAAGGAAGGCCCTAGTCAAAATGCAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAATTATCCACAGACTTCATCAGATTCTTGAGCCATTCATGCTCAGGCGTCGTGTTGAAGATGTAGAAGGCATGCTGCCACCAAAGGTCTCTATAGTTTTGCGATGTAGAATGTCAGCTATACAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACATAAGGTTCAAAAGAATCCAGTCTACCAGACAAAGCAATATAAAACGTTAAATAACAGATGCATGGAGCTACGTAAAACTTGCAATCATCCATTGCTTAACTATCCATTCTTCAGTGACTTATCCAAAGATTTCCTTGTAAAATCTTGTGGGAAACTGTGGATCTTGGATCGAATCCTTATAAAACTTCAAAGGACTGGACACAGAGTTCTGCTCTTTAGTACAATGACTAAACTCTTAGACATTTTGGAAGAATACCTGCAATGGCGACGGCTTGTCTACCGGAGAATTGATGGGACAACGAGTTTGGAAGATCGTGAATCAGCCATAGTGGATTTCAATAGTGCTGGTTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACTGTAGTCATATATGATCCTGACCCAAATCCTAAAAATGAGGAGCAGGCAGTTGCTAGAGCTCATCGCATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTAGACAAAATCTCCAGCTATCAAAAAGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGTAGGTAAGGATCGTTATATTGGATCCATTGAAAGCCTGATAAGGAACAATATTCAACAGTATAAGATTGATATGGCCGATGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTACCAGGAGACTGTCCATGATGTTCCCTCTTTACAGGAGGTAAATCGCATGATTGCTAGGAGTAAGGAGGAACTTGAATTGTTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAGATGACAAAGTATGATCAGGTGCCTAAGTGGCTTCGAGTAAGTACAAGAGAAGTAAATGCCACTATTGCTGCTTTATCTAGAAAACCATCAAAGAACACTCTATTAGGCGGTGATGTCAGCGTGCAATCCAGTGAAATGGGATCTGAAAGGAGAAGAGGACGACCCAAGGGAAAGAAGAATCTTAATTACAAAGAGTTAGATGATGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATATTCAGCCCATGAAGATGAAGGGGAAATTGGAGAATTTGAAGATGATGGGCTTAGTGTGGCAGATGGAACTCAACCCAATGATAAGGATCAATTGGAAGAAGATGGTCCAATTTGTGATGCTGCATATGAATTTCCTCAGTCCACAGAAAATGTAAGAAACAGTCTGACAGCTGAAGGATCTGGATCCCCTGGAACATCCTCAGGCAGTCAAAGATTAACACAGACAGTATCTCCTTCAGTTTCCTCTCAGAAATTTGGTTCCCTCTCTGCACTGGATGCCAGGCCAGGTTCCCTTTCAAAAAGGATTACTGATGAGTTAGAGGAGGGAGAAATTGCTGTATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCTAAGATTAAGCGGAAACGTAGTCTTCGTGTTCGACCTCGTCATGCCCTGGAGAGGCCTGAGGAAAAGTCTGGTGGTGAGGGGGGATCTCTTCACCGAGGAGGATCCTCTCTTTTGGCTGTTCATGTAGACCATAGATATGAAGTGCAATCAAAGACCGATCCTGATGAAAAGTCATTTGGAGGCTCCAATGCTGGCAGGCATGATCAAAACGAATCATCCTTAAAAGTAAAGAGAAATTTACCTTCAAGAAGAGTATCTGCTACCTCCAAATTACAGGGCTCACCTAAGTCTAGCAGATTGAACTGCATTTCTACTCCTTCTGAGGACGGTGGACACTCAAGAGAAAGTTGGGAGGGGAAGCCTATCAACTCTAGTGGGTCTTTGGCCTTGTCCTCCAAAATGCCTGAAATCATCCAGAGAAGGTGTAAGAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCAACAAATTGTACCTTTGCTAAAAGATTTATGGAAGAGGATTGAAAATTCAGGGTACACAGGTGGATCTGGGAACAGTCTATTGGATTTGCGGAAGATTGACCAGCGAATTGATAGAGTGGAGTATAGTGGAGTGATGGAGCTTGTGTTTGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTATGGATTTTCACATGAGGTAAGATCTGAAGCGAGAAAGGTTCATGATCTCTTTTTTGATATCTTAAAAATTGCTTTTCCTGATACGGATTTTCGAGAGGCAAGAAATGCGCTTCCTTTCACGGGTCAAATTTCAGCCAGTGCTGTAACATCTCCCAGACAGATGGCTGGCAGCCAAACCAAGAGGCACAGGACATTAAATGAGGTGGAAATTGATGCAAACCCTTCACAGAAGCACCTGCAGCGTGGATCTGCTTCAAGTGGGGAAAACACCAGGATCAAAGTTCATATTCCACAGAAGGAATCAAAATCTGGAAATGGAGGTGGCAACAACCGAGAACTTCAGCCGGATGATTCTCCGCTGCTTACTCATCCAGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGACAAATCATTGGCCAAGTCTAGGACTGGGTCAGTTGGCCCGGTCTCACCACCTAGCGTGGTACCTGCTGCAAGAAGTCCAGGGCTTGGTTCCGTCCCAAAGGATGCTAGAATGGCGATTGGCCAGCCATGTCAGCAACCAAATGGATCTGGTGGGTCAGTTGGCTGGGCGAATCCAGTAAAGCGATTAAGGTCAGATTCTGGGAAGAGAAGACCAAGTCATCTGTAG 6438 0.4306 MQLPQQSRKFNELTQHGPNQEALLKGQNIEQQMLNPVHQAYLQYAHQAAQQKSALAVHSQQQNKMGMLVPSSVKDQEMRMGNLKMQELMSMQAVNQAQGSTSRNVPEQFSRGEKKIEQGQQLAPDLKGEGKPSTQGPAVAQLMPGNMIRPVQTPVDRQGIQNVMSNQIAVSAQLQAMQAWARERNIDLSHPANANLIAQIFPMKQSRIVSQQKANESSMGAQSSLVPVSKQQVTSPAGASDSSAHANSSSDASGLSGPAKARQLPANHFGPPTNVVTASHSGDTAVQQFNNHNRESQVSMRQPVLVGNGMPSAQPQQSSTSMNLGSEHHFNAKNTLSGPEPPQTQYLRKLNQLSSQASGATNEGGSGNYVKSQGAPSQMSQQRHGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIVPPTLELQSQQPIHPSGGQNQDNSAGNIMPEHSRHIESEAKDLQHIHAVNGHGSSKHETSARDEKSTVSAVHMQAKPVVTKDPAPMLSSQREEQQPFGCSVKSDQESERETNRNPVRNELLLDKGKAIAPQPSASESMQNKNPAQTSTVGQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMVSSNNNLLLAYDVKDLLVDEGTEVINKKRVENLKKIEGLLANNSERKLIRPDLVMRLQIEEKKLHLRGLQVRLRDEIDQQQQEIMAMPDRQYRKFVRLCERQRMELARQVQASQRAIREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYSVLSTFLTQTEEYLQKLGSKITAAKNQQEVEEAGKVAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDGSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPSQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVSIVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKHKVQKNPVYQTKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSYQKEDELRSGGTVDMEEELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEELELFDQMDEELDWIEEMTKYDQVPKWLRVSTREVNATIAALSRKPSKNTLLGGDVSVQSSEMGSERRRGRPKGKKNLNYKELDDENEEFSEASSDERNEYSAHEDEGEIGEFEDDGLSVADGTQPNDKDQLEEDGPICDAAYEFPQSTENVRNSLTAEGSGSPGTSSGSQRLTQTVSPSVSSQKFGSLSALDARPGSLSKRITDELEEGEIAVSGDSHMDNQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRHALERPEEKSGGEGGSLHRGGSSLLAVHVDHRYEVQSKTDPDEKSFGGSNAGRHDQNESSLKVKRNLPSRRVSATSKLQGSPKSSRLNCISTPSEDGGHSRESWEGKPINSSGSLALSSKMPEIIQRRCKNVISKLQRRIDKEGQQIVPLLKDLWKRIENSGYTGGSGNSLLDLRKIDQRIDRVEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEARKVHDLFFDILKIAFPDTDFREARNALPFTGQISASAVTSPRQMAGSQTKRHRTLNEVEIDANPSQKHLQRGSASSGENTRIKVHIPQKESKSGNGGGNNRELQPDDSPLLTHPGELVVCKKRRNDRDKSLAKSRTGSVGPVSPPSVVPAARSPGLGSVPKDARMAIGQPCQQPNGSGGSVGWANPVKRLRSDSGKRRPSHL 2145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2596 2145 Gene3D - 902 1150 IPR038718 -
Prci12g2596 2145 SMART helicmild6 1268 1352 IPR001650 -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 2060 2076 - -
Prci12g2596 2145 Pfam SNF2-related domain 914 1218 IPR000330 GO:0005524|GO:0140658
Prci12g2596 2145 Gene3D - 713 786 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 506 521 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1726 1740 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1795 1823 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 2035 2049 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1669 1685 - -
Prci12g2596 2145 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1242 1419 IPR001650 -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 551 573 - -
Prci12g2596 2145 Gene3D - 1151 1361 IPR027417 -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1696 1715 - -
Prci12g2596 2145 FunFam ATP-dependent helicase BRM 1151 1361 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1760 1838 - -
Prci12g2596 2145 SMART bromo_6 1844 1959 IPR001487 GO:0005515
Prci12g2596 2145 FunFam Brahma1 1846 1969 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1981 2145 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 522 539 - -
Prci12g2596 2145 Coils Coil 1458 1478 - -
Prci12g2596 2145 ProSiteProfiles QLQ domain profile. 385 421 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1617 1659 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 211 279 - -
Prci12g2596 2145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 894 1141 IPR027417 -
Prci12g2596 2145 Pfam QLQ 386 419 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1517 1531 - -
Prci12g2596 2145 SMART QLQ_2 384 421 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci12g2596 2145 SMART ultradead3 907 1096 IPR014001 -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 1517 1747 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 428 447 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 2002 2025 - -
Prci12g2596 2145 SUPERFAMILY Bromodomain 1898 1957 IPR036427 GO:0005515
Prci12g2596 2145 Pfam Helicase conserved C-terminal domain 1241 1352 IPR001650 -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 211 256 - -
Prci12g2596 2145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1145 1483 IPR027417 -
Prci12g2596 2145 CDD SF2_C_SNF 1237 1362 - -
Prci12g2596 2145 PANTHER SNF2/RAD54 HELICASE FAMILY 617 1705 - -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 355 387 - -
Prci12g2596 2145 FunFam ATP-dependent helicase BRM 902 1150 - -
Prci12g2596 2145 Coils Coil 1550 1570 - -
Prci12g2596 2145 FunFam ATP-dependent helicase BRM 712 786 - -
Prci12g2596 2145 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 923 1088 IPR014001 -
Prci12g2596 2145 MobiDBLite consensus disorder prediction 470 575 - -
Prci12g2596 2145 Gene3D - 1846 1990 IPR036427 GO:0005515
Prci12g2596 2145 MobiDBLite consensus disorder prediction 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2596 Prci-Chr12 43422319 43435793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2596 932 1393 RAD5 or RAD16-like Gene Family AT1G02670 26.404 1.65e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g2596 SNF2_N 3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2596 K11647 - gmx:100807104 3264.55