Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2582 ATGGCCGGAGTAACGTTTGCCTGTCTGAAACATCTCAAGAAATATTCAGCCAAGTGTTCTTTGAACTCGGAGCTAATTCAACCAAATCACCGTATGATGAACCTTACCAGACGTGAGGATTGCGTTCATGTAAGCTTTCCGTGTAGCTCACTGAGTCAAGCTTATTCCAAACGAGAGTTACAGTTGCATGACATTTTTGTCAAGAATCAGTTTAGAACTATAATTTCTGAAAAGAGCAACCTCTTGAATACCAAACCCAGTGCTTCATTTTCTCCTAAATTTTCCAGCTTTTGGCTCCACCATGCTCTTCCTTTTACTTCAATGACCCTCTTGTTGAATCATCGGTCATATTCTTCATCTCTGAGTGGCAAATTAAGTAGAGATGGAACCACAGATTTTGCACCTGATTCTATTGATGCAAGTGACTGGACTGATGAACTGACTCCATTTCTTCAACAGTTGCTCGACTCAAATCCTTACCTCAATGATGTGGTTATTCCAGTTGGTGGTACATTGACTGCCACTCTAATAGCATGGACTGTGATGCCTCTGATCTTGAGGAAATTTCACGAAAATGCATTGCAAAGTTCTGCAGCAACATTTCTGAGAAGCAAATATGGTGCGCAAGTTCCTCATGAGAAAAGCTTGTGGGGTGCTTTGGAGGATCCACTGCGATATTTAGTTGCCTTCGTGGCATTCTCACAGATTTGTGTAATGGTAGCTCCAACAAGTGAAGCCCCACAGCAACTAGCAGAGGCTTGGAGGAAGGCAGTGATGTTGTTATTTACGTGGTTTTTGCATCGATGGAAGACAAATATCTTGGGACACATGTCGTCCAGTCAGAGTTTACTTGGGCATGGTCAACATAAATTGCTTACTCTGGACAAAGTCTCATCTGCTGGTGTATTTGGGATTGGTACAATGGCTCTGGCCGAGGCTTGTGGTGTCTCTGTTCAATCTATTGCCACTGCTGGCTGCATAGGAGGACTTGCCATAGCTTTTGCCGCCAGAGACGTCATTGGCAATGCGTTCAGTGGATTGTGTATGCAGTTCACGGAGCCCTTTACAATTGGAGATACAATCAAAGGATGTGAGAAATCTGACCTGGCTGGGTCAGTGGAAGGAGAAGTTATTGAAATGGGAGTGACAAGCACATCATTGGTGAATGCCGAGAAGTTGACAGTGGTAGTGCCCAACTCATTTTTTTGCAGCCAGGTAGTAGTGATAAAGAGTCGAGTCGAATGGCACAGCATGATGTCAAAGATTACTGTGAGGATTGAAGCGATAAATAGAATTTCCAGAATAACAGATGATATAAAAAGTATGCTAGCTACAAGCCCCATGGTTTTGTCGGGGAAAGGGGACCCTTACTGTTACTTGTCCCGCATTGAAACTTCATACGCAGAGTTGACACTTGGATACAACCTCAAACACATGGGCAAAGATGAGATGCGTGGGGCAGAACAAGACATCGTTGGGGAGGCCGTTGAGATTACCAAGAGGCACGCTGCTGAACTTGGCCTTCTCACCTCTTCTTCATCTGATTCTGACTGA 1554 0.4414 MAGVTFACLKHLKKYSAKCSLNSELIQPNHRMMNLTRREDCVHVSFPCSSLSQAYSKRELQLHDIFVKNQFRTIISEKSNLLNTKPSASFSPKFSSFWLHHALPFTSMTLLLNHRSYSSSLSGKLSRDGTTDFAPDSIDASDWTDELTPFLQQLLDSNPYLNDVVIPVGGTLTATLIAWTVMPLILRKFHENALQSSAATFLRSKYGAQVPHEKSLWGALEDPLRYLVAFVAFSQICVMVAPTSEAPQQLAEAWRKAVMLLFTWFLHRWKTNILGHMSSSQSLLGHGQHKLLTLDKVSSAGVFGIGTMALAEACGVSVQSIATAGCIGGLAIAFAARDVIGNAFSGLCMQFTEPFTIGDTIKGCEKSDLAGSVEGEVIEMGVTSTSLVNAEKLTVVVPNSFFCSQVVVIKSRVEWHSMMSKITVRIEAINRISRITDDIKSMLATSPMVLSGKGDPYCYLSRIETSYAELTLGYNLKHMGKDEMRGAEQDIVGEAVEITKRHAAELGLLTSSSSDSD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2582 517 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 255 337 IPR011014 GO:0016020
Prci12g2582 517 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 144 510 - -
Prci12g2582 517 Pfam Mechanosensitive ion channel 296 503 IPR006685 GO:0016020|GO:0055085
Prci12g2582 517 Gene3D - 254 352 - -
Prci12g2582 517 SUPERFAMILY Sm-like ribonucleoproteins 338 407 IPR010920 -
Prci12g2582 517 Gene3D - 354 408 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2582 Prci-Chr12 43300105 43303558 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2582 126 507 Mechanosensitive Ion Channel Family AT4G00290 54.712 1.19e-145 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2582 K22047 - gmx:100789047 492.656