Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2570 ATGGTGTCGGTGAATCCGAACCCAGCTCAAGGATTCTACTTCTTCGATGCCACCAAGATGGGGCTTCCCGGTGTCAATCCTACGCCCCCACCTCCGGCTACTGCCACGGCTTCTTCTTCCACGGCCACTACCGCCGGCGTCAGTGCGGCTTCCTACGGGGAGGATCTAAGCAAGAAGATCCGAAAACCATACACGATTACCAAGTCCAGGGAGAGCTGGACGGAGCAGGAGCACGACAAATTTCTCGAAGCTCTCCAATTATTTGACCGTGACTGGAAGAAGATTGAAGCATTTGTTGGTTCAAAAACTGTAATCCAGATACGGAGTCATGCACAGAAGTATTTCCTGAAAGTTCAGAAAAATGGAACAAGCGAACATGTACCTCCACCTCGGCCAAAAAGAAAGGCTGCTCATCCATACCCACAAAAGGCACCTAAAAATGCTCCATCTGTATGCCAAGTTACAATGCCATTGCAGTCTTCATCTTCTTCCATTGAGCCTTTATACATTTATGGGCCAGACTCATCATCTGCACTTGGAACTCCAGTTAACAGTGTGCCTTTGTCAAATTGGACTTGTAATGTTATACCACCATCCAATGCGCCACAAGTGACTAGAGATGAGGTGGGATTGCCTGGCCAAGCCGCTTCTCTAAATTGTTGCTATAGCAGTAGTAATGAGAGCACTCCAAGGGCTTGGCCAAGAAGCCAAGTTATTGATCAAGGAAACTTAGGCAAGCCAATCAAAGTAATGCCGGATTTTGCACAAGTCTACAGCTTTATTGGTAGTGTGTTTGATCCAAATGCAGCAAACCACTTGGAGAGACTGAAACGGATGGACCCAATAAATGTGGAAGCGGTGTTACTATTAATGAGAAACCTCTCCATCAATTTATTGAGTCCCGAATTTGAGGATCATAGAAGGTTTCTTTCATCGTACGATCCTGCCTCTGAGAAGGTGAAGTCTGGTAATCTCTGTAGCAATCCTCTAACGGACAAGTCTCACAGTGCAATTCTGTCTGCTTAA 1026 0.463 MVSVNPNPAQGFYFFDATKMGLPGVNPTPPPPATATASSSTATTAGVSAASYGEDLSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPSVCQVTMPLQSSSSSIEPLYIYGPDSSSALGTPVNSVPLSNWTCNVIPPSNAPQVTRDEVGLPGQAASLNCCYSSSNESTPRAWPRSQVIDQGNLGKPIKVMPDFAQVYSFIGSVFDPNAANHLERLKRMDPINVEAVLLLMRNLSINLLSPEFEDHRRFLSSYDPASEKVKSGNLCSNPLTDKSHSAILSA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2570 341 PANTHER SWI/SNF COMPLEX-RELATED 34 299 - -
Prci12g2570 341 SUPERFAMILY Homeodomain-like 64 120 IPR009057 -
Prci12g2570 341 SMART sant 69 117 IPR001005 -
Prci12g2570 341 FunFam protein REVEILLE 6 isoform X1 72 120 - -
Prci12g2570 341 MobiDBLite consensus disorder prediction 119 149 - -
Prci12g2570 341 CDD SANT 72 115 IPR001005 -
Prci12g2570 341 ProSiteProfiles SANT domain profile. 68 121 IPR017884 -
Prci12g2570 341 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Prci12g2570 341 Gene3D - 73 120 - -
Prci12g2570 341 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Prci12g2570 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 68 117 IPR006447 GO:0003677
Prci12g2570 341 MobiDBLite consensus disorder prediction 23 42 - -
Prci12g2570 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2570 Prci-Chr12 43207204 43214035 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci12g2570 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2570 - - gmx:778090 476.092