Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2533 ATGAGGGGAACCGAATTCTCTGGGCAGAAAACCATCACAAGCAAGCTTGTGAGAAACTCGTTCTTTACTGGGGGGGAACCAAGAGTCGTTCGGATTTCTGTAGCTGACAACTATGCTACTGATTCTTCCAGTGATGAAGACGAGAGAGACCACCGATTTCCTCGCCCGCCGAAGAAGTTTGTCCATGAGATCAGAATCGAAGATTTCTCGAGTTTCACAGCTAGCAGAGAAGTTAACGGTGATTCCAGACCCATTTTGAAGGAGAAGTCGAAGCAGAAGAGGGAGAAACGTCCTGCAATACCCCGAAGAAAACAGGGCCTTCCCAACGGGAAGAAGTTTCGCGGCGTCAGGCAGAGACTGTGGGGGCGGTGGGCAGCCGAGATTCGGGACCCGTTTCTGCGAGCTCGGAAGTGGCTTGGCACGTTCGACACGGCAGAGGAAGCGGCTTTGATGTACGACATAGAAGCCATTCGTCTAAGAGGAGCCGACGCTCTTACTAATTTAATCAAACCGCCCGAGAAACACCAACCTCTCGTGCTGCCATTGAGTAATGACGCGTCCCAAGGGTCAGTGAAATGTCCTCTGAAGAAGAAGAACAAGTGGTTGGAAAATGAGTGTGTCTACGATTCAAGCAAAGAGTCTCGAGATTTACTGTCGTCGTCTTCTTCCTCGCCGACTTCTGTTCTCAGATACAGTGGGAGAGGGTCCTTTGAGCGTACAGGGTGGGCAGGCATCCAGGAATCCAGAGAAGAAGAAGAAAAGTTCTTGTTCCCAGATTCATCACCTGAATTCGTGTCCTATTGTTATACGGATTACGAAACTCCTCTGAGCCAGCCGTTGTTTGTTGAATCCAGTGTGCCTCAACTGATTTCTAGTGAGATTTTGAGGGACATTCCCTTTCAACTCGATGATGATTTTGAATCTTCCAAGTGGGTCGTAGATAATTACTTTCAGGATCCTTTGCCTCTGAAATGA 975 0.4872 MRGTEFSGQKTITSKLVRNSFFTGGEPRVVRISVADNYATDSSSDEDERDHRFPRPPKKFVHEIRIEDFSSFTASREVNGDSRPILKEKSKQKREKRPAIPRRKQGLPNGKKFRGVRQRLWGRWAAEIRDPFLRARKWLGTFDTAEEAALMYDIEAIRLRGADALTNLIKPPEKHQPLVLPLSNDASQGSVKCPLKKKNKWLENECVYDSSKESRDLLSSSSSSPTSVLRYSGRGSFERTGWAGIQESREEEEKFLFPDSSPEFVSYCYTDYETPLSQPLFVESSVPQLISSEILRDIPFQLDDDFESSKWVVDNYFQDPLPLK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2533 324 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Prci12g2533 324 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
Prci12g2533 324 MobiDBLite consensus disorder prediction 76 110 - -
Prci12g2533 324 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
Prci12g2533 324 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Prci12g2533 324 MobiDBLite consensus disorder prediction 81 95 - -
Prci12g2533 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 233 - -
Prci12g2533 324 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Prci12g2533 324 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Prci12g2533 324 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Prci12g2533 324 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2533 Prci-Chr12 42909873 42910847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2533 1 231 AP2-EREBP Transcription Factor Family AT4G27950 39.749 1.05e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g2533 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2533 - - pcin:129289381 624.394