Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2518 ATGGCCAAAAGCGGCGGAAAGACGAGTAGCTCTTACTCTGCTGAAGAGGTGAGTAGCATTGAATGGGAGTTCATTAACATGTCAGATCAAGAAGAAGATCTAATTCACAGAATGCACCGACTTGTTGGAGACAGGTGGGGCCTGATAGCTGGGAGGATTCCAGGACGAAAAGCTGAGGAGATTGAAAGGTTTTGGATGATGACATATGGAGAAGTGTTTGCCAGCAAACGAGAACAACTCAACAGACGAAGCTCTTCATGTTAA 264 0.4545 MAKSGGKTSSSYSAEEVSSIEWEFINMSDQEEDLIHRMHRLVGDRWGLIAGRIPGRKAEEIERFWMMTYGEVFASKREQLNRRSSSC 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2518 87 CDD SANT 26 67 IPR001005 -
Prci12g2518 87 SMART sant 23 71 IPR001005 -
Prci12g2518 87 SUPERFAMILY Homeodomain-like 28 68 IPR009057 -
Prci12g2518 87 Gene3D - 28 69 - -
Prci12g2518 87 Pfam Myb-like DNA-binding domain 28 66 IPR001005 -
Prci12g2518 87 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 26 71 - -
Prci12g2518 87 FunFam MYB-like transcription factor 26 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2518 Prci-Chr12 42772604 42774112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2518 27 79 MYB Transcription Factor Family AT5G52600 49.057 9.86e-14 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci12g2518 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2518 K09422 - cpap:110825591 126.331