Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2510 ATGGCGGATTCTGATGACCAGACGAAATCTTCTGAAAATCAACCATCAGAGCAAGTGTGTAGTTTCTTCAGGAAACCTGTTAATAAGAAGAATTTAAGAAAACGTACCGTTGATTTAGAAGATGACAGGGAGGATTCGAAAAATGAAAGCTCTTTGTTGCATATTCAGAAAAAACAGGTGAAGCCTGACAATAAGTTATACTTTTCCACTGGTCCCTCAAAAAGCACTGCATCTAAAGTACAAGAGGAGCCTGAAAAGCAATTGTTTCATTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAACAAAGCAACTGCCACTCTTGAGACCGAAACTGATTTTTCAAAAGATGCTCGAGCTATCCGTGAAAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAGGAACAAGTTCTGGAGAAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGCCGAGAGCAAACAATTGCCAGTGAAAAAGCTGGTGGGGCGCATGGTCCTCTTCGGGCATCGGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCATGTAAATTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAATTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGAAGAATGAGATTGGCTGCAGGAGAGGATTCGGATGAAGAGGGTGCTAATTTGAGTGAAGATGATGACGATGACGATTCATTACCATTTGCCTGTTTCATTTGTAGGAAGCCCTTTGTGGATCCTGTTGTAACAAACTGCAAGCATTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACACTGGGCATTTTTAATGCAGCCCATGAGATACGCAAGAAGATGGCTGCAGAGGCAAACTCTTCGACTGCAATTCTTATTGGAGGCATGTATGATAATCGTTTTGGAATTTGGATTTATCAAGAGTTCAGTAGTATAATCCTGTATTGGCATCAGAGATGA 1089 0.4096 MADSDDQTKSSENQPSEQVCSFFRKPVNKKNLRKRTVDLEDDREDSKNESSLLHIQKKQVKPDNKLYFSTGPSKSTASKVQEEPEKQLFHFESSKEIQVQHDNKATATLETETDFSKDARAIRERALKQAEESLKGKGTSSGEEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDSDEEGANLSEDDDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEANSSTAILIGGMYDNRFGIWIYQEFSSIILYWHQR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2510 362 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Prci12g2510 362 Coils Coil 29 49 - -
Prci12g2510 362 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Prci12g2510 362 SUPERFAMILY RING/U-box 268 311 - -
Prci12g2510 362 PANTHER ZINC FINGER PROTEIN 183 7 329 IPR039971 -
Prci12g2510 362 SMART ring_2 269 306 IPR001841 -
Prci12g2510 362 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Prci12g2510 362 FunFam Zinc finger CCCH domain-containing protein 1 189 223 - -
Prci12g2510 362 FunFam RING finger protein 113A 267 326 - -
Prci12g2510 362 MobiDBLite consensus disorder prediction 1 85 - -
Prci12g2510 362 MobiDBLite consensus disorder prediction 32 61 - -
Prci12g2510 362 MobiDBLite consensus disorder prediction 7 21 - -
Prci12g2510 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Prci12g2510 362 CDD RING-HC_RNF113A_B 265 315 - -
Prci12g2510 362 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Prci12g2510 362 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Prci12g2510 362 MobiDBLite consensus disorder prediction 238 261 - -
Prci12g2510 362 Gene3D - 189 223 - -
Prci12g2510 362 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Prci12g2510 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2510 Prci-Chr12 42624618 42627478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2510 1 327 C2H2 Transcription Factor Family AT1G01350 66.766 6.75e-167 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci12g2510 zf-C3HC4_3 2e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2510 K13127 - gmx:100787434 567.385