Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2496 ATGGATGCCAAGGGGCAAAAAGTTGTGAGGTTTAAGGACTGGAGATCAGAATCATCTTTCAGTGTTGAGAACACAAATTCTACTGATGATGGATATCCTCAGAGAAAAATTAGACCAAGAGTAAGAGCTGTGTTTAAGAATATTAGAAGAAGACTCCAGAGAAGGTTTGAGAAGATTAAAACCTTGAGAAAACCTGTAAATGTGCATCCAGTAAGTGATGCAACACCTAAGAAATCGGCTTCGGGAAGGAAGATTCTTGATCCACAGGGGTCTTTCCTTCAGAAATGGAACAAGATTTTTGTGATCGCATGTGTACTGGCAGTTTCTGTGGATCCTCTGTTCTTTTACATCCCAGTTATTGATGACGAAAAAAAATGCCTTGCTTTAAATAGCAACTTGGAGATTACTGCCAGTGCTCTTCGTACATTCTTTGACCTTTTCTACATTCTCCACATAATATTTCAGTTTCAAACGGGTTTTATTGCCCCTTCTTCTCGAGTATTTGGTAGGGGTGAGCTCATTGATGATCCTCATGCCATTGCAAAAAGATACTTATCTTCATACTTCATCATTGACATCCTTTCAATTATTCCATTTCCACAGGTGGTTATTTTGGCACTCAGACATTCAGTTCCACGTCCATCTGTAGAAAAGGACTGGTTAAAATATGCAATAGTAATCCAATATGTCCCTAGATTTCTTCGGATCCATCCATTATTCACAGAAGTAACTAGAAATTCTGGCATATTGACTGAGACAGCATGGGCTGGCGCTGCTTATAATCTCTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTACCTGTTTTCAGTAGAATCAGTGCTTCGATGCTGGCGCAGATTCAAGTGTCACTTCGAGGATCCTGACGAAATTGGTTTTGGAATGTACACCGACGCTTTAAAATCTCATATTGTGGAATCAACAATGGATTTTCCTCAAAAGATCTTCTTCTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCACTGGGACAGAATCTCAAAACAACTACATATGTAGGGGAGATCATCTTTGCTTGCTTCATCGCAATTTTTGGGTTGGTTCTGTTCTCATTACTCATTGGAAACATGCAGAAATATCTGCAATCTGTAACTGTCAGAGTTGAAGAAATGAGAATCAAGAGGCGAGATGCAGAGCGGTGGATGTCCCACCGTATGCTGCCTGAGCACTTGAGGGAAAGAATCAGACGGTATGAGCATTACAAATGGCAAGAAAACAGGGGAGTGGACGAGGAAACATTGATCCACAATCTTCCTACAGATCTCAGAAGAGACATAAAGCGTCACCTTTGCTTAGGTTTACTTAAAAAAGTTCCACTGTTTGAGAAAATGGATGAGCGGCTATTGGATGCACTTTGTGATAGGCTGAAGCCAGTACTTTATACAGAGAAGAGCTACATTGTTCGAGAAGGAGATCCAGTGGATCAAATGCTCTTCATTATGAGAGGAAACCTTGCTACTATGGCAACGAATGGTGGAAGAACTGGTATTCTCAATTCCTTTGTAATCAAGGCAGGTGATTTCTGTGGAGAGGAGCTTTTAACATGGGCCTTAGACCCCAACTCGTCCTCAAATCTTCCCATTTCAACCAGAACAGTAGAATCTATATCAGAAGTTGAAGCCTTCGCTCTCATGGCTAATGACTTGAAGCACGTTGCTTCCCAATTCCGACGCCTTCACAACAAACACATCCAGCACACTTTCAGGTACTATTCCATGCAATGGAGGATATGGGCTGCCCGTTTCATACAAGCAGCTTGGCGTCGCCACTGCAAAAGGAAGATTGAGAAATCATTACGTGAAGCTGAGTACAGGCTACAAAATGCTTTGGCAAATGAGGAAGGTCCGTCTCCAAGTTTTGGTGCCACCATATATGCATCAAGGTTTGCTGCCAATGCGTTACACAACCTGAGAAAAAATAGGGATCGAAACAAAAGAATGCCTCAGAGATTGCTTCCTCTTCTGCCTCAGAAACCAACTGAGCCTGATTTCACTGCTCAAAAGCTTTAG 2058 0.4189 MDAKGQKVVRFKDWRSESSFSVENTNSTDDGYPQRKIRPRVRAVFKNIRRRLQRRFEKIKTLRKPVNVHPVSDATPKKSASGRKILDPQGSFLQKWNKIFVIACVLAVSVDPLFFYIPVIDDEKKCLALNSNLEITASALRTFFDLFYILHIIFQFQTGFIAPSSRVFGRGELIDDPHAIAKRYLSSYFIIDILSIIPFPQVVILALRHSVPRPSVEKDWLKYAIVIQYVPRFLRIHPLFTEVTRNSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESVLRCWRRFKCHFEDPDEIGFGMYTDALKSHIVESTMDFPQKIFFCFWWGLRNVSSLGQNLKTTTYVGEIIFACFIAIFGLVLFSLLIGNMQKYLQSVTVRVEEMRIKRRDAERWMSHRMLPEHLRERIRRYEHYKWQENRGVDEETLIHNLPTDLRRDIKRHLCLGLLKKVPLFEKMDERLLDALCDRLKPVLYTEKSYIVREGDPVDQMLFIMRGNLATMATNGGRTGILNSFVIKAGDFCGEELLTWALDPNSSSNLPISTRTVESISEVEAFALMANDLKHVASQFRRLHNKHIQHTFRYYSMQWRIWAARFIQAAWRRHCKRKIEKSLREAEYRLQNALANEEGPSPSFGATIYASRFAANALHNLRKNRDRNKRMPQRLLPLLPQKPTEPDFTAQKL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2496 685 CDD CAP_ED 456 587 IPR000595 -
Prci12g2496 685 Pfam Ion transport protein 96 384 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci12g2496 685 Gene3D Jelly Rolls 454 574 IPR014710 -
Prci12g2496 685 Gene3D Helix hairpin bin 383 447 - -
Prci12g2496 685 Coils Coil 608 628 - -
Prci12g2496 685 SUPERFAMILY Voltage-gated potassium channels 87 378 - -
Prci12g2496 685 MobiDBLite consensus disorder prediction 656 685 - -
Prci12g2496 685 Pfam Cyclic nucleotide-binding domain 476 569 IPR000595 -
Prci12g2496 685 Gene3D - 97 382 - -
Prci12g2496 685 FunFam Cyclic nucleotide-gated ion channel 1 383 447 - -
Prci12g2496 685 FunFam Cyclic nucleotide-gated ion channel 1 454 572 - -
Prci12g2496 685 SUPERFAMILY cAMP-binding domain-like 385 581 IPR018490 -
Prci12g2496 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 74 680 - -
Prci12g2496 685 ProSiteProfiles cAMP/cGMP binding motif profile. 456 540 IPR000595 -
Prci12g2496 685 SMART cnmp_10 456 587 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2496 Prci-Chr12 42528082 42535216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2496 1 682 Ion Channels AT5G53130 62.241 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2496 K05391 - qsa:O6P43_017768 990.719