Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2476 ATGGAATCCGAAACACGACGGAAAATCGAGGAAACGGTGCTGGATGTGCTGAAGAATTCTAACGTTGATGAAGCGACTGAGTTCACAGTCCGACTCGCGGCCTCGGAGCGGCTCGGAATCGATCTCTGTGTCTCGGAGCACAAGCTGATGGTTAGAGGCATTGTGGAGTCGTATCTGCTCGCTATCGCGGAGGAAGAAGGTGGGAGGGTCCCCGCGTCTGAGCCAAGTGCTCCACAAGAGACGAGAGAGGTGATGCAGGATGAGCAGGAGGCGAAGCCAAACAAGGAGGTTAAGGAGGACTCCGAGCGCATAATTTGCCAGTTATCAAACAAGAGGAATGTGGTGGTTCATGATTTCAGAGGGAAAAGGTTGGTCTCAATTAGGGATTATTATCAGAAAGATGGAAAACAATTTCCTTCAGCTAAAGGGATAAGTTTGTCTACTGATCAATGGTCTGTCTTCAAAAAAAGTGTCCCTGCTATAGAGGAAGCTATTACAAAGATGGAGGCAAAGATGGGATCTGAGGTTTATGGAAAGCAAAATGGAGATGTGCCGAAACCAAATCTTGATGCTCCTCCTCTTGATCTGGTCTCTGCTGCTTCTCCTCCTGAACCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCATTTATGGGTTCAGCAGATGGAATCACTCTTGAAGCAACTAAAGATTGCGTATGTGCTCACTGAACTATGCCCAAACGCTACACCAGGACCACATGCAAGCGCTGTAGAAGTTGCTGAAGCCAGGGCAGCAGAGAAGAGACTCTATTGTCTCTGCTGGAATGATGATTGA 825 0.4752 MESETRRKIEETVLDVLKNSNVDEATEFTVRLAASERLGIDLCVSEHKLMVRGIVESYLLAIAEEEGGRVPASEPSAPQETREVMQDEQEAKPNKEVKEDSERIICQLSNKRNVVVHDFRGKRLVSIRDYYQKDGKQFPSAKGISLSTDQWSVFKKSVPAIEEAITKMEAKMGSEVYGKQNGDVPKPNLDAPPLDLVSAASPPEPVPIEISRFDGKNYHLWVQQMESLLKQLKIAYVLTELCPNATPGPHASAVEVAEARAAEKRLYCLCWNDD 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2476 274 Pfam Transcriptional Coactivator p15 (PC4) 106 156 IPR003173 GO:0003677|GO:0006355
Prci12g2476 274 Pfam DEK C terminal domain 5 59 IPR014876 -
Prci12g2476 274 MobiDBLite consensus disorder prediction 67 98 - -
Prci12g2476 274 Gene3D Transcriptional Coactivator Pc4; Chain A 95 173 IPR009044 GO:0003677|GO:0006355
Prci12g2476 274 FunFam RNA polymerase II transcriptional coactivator KELP 97 169 - -
Prci12g2476 274 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 170 IPR045125 GO:0003713|GO:0060261
Prci12g2476 274 MobiDBLite consensus disorder prediction 81 98 - -
Prci12g2476 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 105 167 IPR009044 GO:0003677|GO:0006355
Prci12g2476 274 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2476 Prci-Chr12 42423930 42426969 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Prci12g2476 DEK_C 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2476 - - qsa:O6P43_027384 289.271