Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2475 ATGGAATCCGAAACACGACGGAAAATCGAGGAAACGGTGCTGGATGTGCTGAAGAATTCTAACGTTGATGAAGCGACTGAGTTCACAGTCCGACTCGCGGCCTCGGAGCGGCTCGGAATCGATCTCTGTGTCTCGGAGCACAAGCTGATGGTTAGAGGCATTGTGGAGTCGTATCTGCTCGCTATCGCGGAGGAAGAAGGTGGGAGGGTCCCCGCGTCTGAGCCAAGTGCTCCACAAGAGACGAGAGAGGTGATGCAGGATGAGCAGGAGGCGAAGCCAAACAAGGAGGTTAAGGAGGACTCCGAGCGCATAATTTGCCAGTTATCAAACAAGAGGAATGTGGTGGTTCATGATTTCAGAGGGAAAAGGTTGGTCTCAATTAGGGATTATTATCAGAAAGATGGAAAACAATTTCCTTCAGCTAAAGGGATAAGTTTGTCTACTGATCAATGGTCTGTCTTCAAAAAAAGTGTCCCTGCTATAGAGGAAGCTATTACAAAGATGGAGGCAAAGATGGGATCTGAGGTTTATGGAAAGCAAAATGGAGATGTGCCGAAACCAAATCTTGATGCTCCTCCTCTTGATCTGGTCTCTGCTGCTTCTCCTCCTGAACCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCATTTATGGGTTCAGCAGATGGAATCACTCTTGAAGCAACTAAAGATTGCGTATGTGCTCACTGAACTATGCCCAAACGCTACACCAGGACCACATGCAAGCGCTGTAGAAGTTGCTGAAGCCAGGGCAGCAGAGAAGAGGTGGGTGAGTGATGATTTCATGTGTCGTCGCAACATCTTGTGCTATTTATCTGATCATCTGTTTAATCAGTATACAAATAGAAAAATGACTGCTAAAGAACTATGGGAGGAGTTAAGACAAGTTTATTTGTATGAGGAATTCGGAACAAAGAGATCACAAGTGAAAAAGTACATTGAATTTAAGTTCGTTGGGGAAAAATCCATACTTGAGCAAGTCCTAGAATTAAATACCATTGCAGACTCTATTGTCTCTGCTGGAATGATGATTGACGAAAACTTCCATGTCAGTGTCCTTATCTCCAAGCTTCCTCCATCTTGGAAGGATGTTTGCATCAAGCTAATGTGCGAAGAGTATCTTCCATTTTGGATGTTAATGGAACGTCTGAGAGTGGAGGAAGAATCTCGCAATCAAGTCAAACAAGGGGATGAACCTTCGAGTAATGACAGAGGCTATCATGAGGCCAGAAAATTTGTTCAAAGATGGGCAGATATAAAGCCTTCAAGTATGTATGGTCAGAGGAATAGGCTAGACATGAATGGCAGGAGTATAGTCTGTTATGTCTGTGGCAAGAAAGGGCATCTTTCCAGAAACTGCTGGAGACGATTTGACAGTCAAGCTAGAGAAAAACGAATTGAAGAAAATGGGCCCTCTGCACCTGTAATTGCACAGGCTAACATGGTCGGTGTCTCTGAGTAG 1491 0.4447 MESETRRKIEETVLDVLKNSNVDEATEFTVRLAASERLGIDLCVSEHKLMVRGIVESYLLAIAEEEGGRVPASEPSAPQETREVMQDEQEAKPNKEVKEDSERIICQLSNKRNVVVHDFRGKRLVSIRDYYQKDGKQFPSAKGISLSTDQWSVFKKSVPAIEEAITKMEAKMGSEVYGKQNGDVPKPNLDAPPLDLVSAASPPEPVPIEISRFDGKNYHLWVQQMESLLKQLKIAYVLTELCPNATPGPHASAVEVAEARAAEKRWVSDDFMCRRNILCYLSDHLFNQYTNRKMTAKELWEELRQVYLYEEFGTKRSQVKKYIEFKFVGEKSILEQVLELNTIADSIVSAGMMIDENFHVSVLISKLPPSWKDVCIKLMCEEYLPFWMLMERLRVEEESRNQVKQGDEPSSNDRGYHEARKFVQRWADIKPSSMYGQRNRLDMNGRSIVCYVCGKKGHLSRNCWRRFDSQAREKRIEENGPSAPVIAQANMVGVSE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2475 496 Gene3D Transcriptional Coactivator Pc4; Chain A 94 173 IPR009044 GO:0003677|GO:0006355
Prci12g2475 496 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 170 IPR045125 GO:0003713|GO:0060261
Prci12g2475 496 SUPERFAMILY Retrovirus zinc finger-like domains 440 466 IPR036875 GO:0003676|GO:0008270
Prci12g2475 496 ProSiteProfiles Zinc finger CCHC-type profile. 450 463 IPR001878 GO:0003676|GO:0008270
Prci12g2475 496 Pfam DEK C terminal domain 5 59 IPR014876 -
Prci12g2475 496 FunFam RNA polymerase II transcriptional coactivator KELP 97 169 - -
Prci12g2475 496 Gene3D - 394 479 - -
Prci12g2475 496 Pfam Zinc knuckle 449 463 IPR001878 GO:0003676|GO:0008270
Prci12g2475 496 MobiDBLite consensus disorder prediction 67 98 - -
Prci12g2475 496 SUPERFAMILY ssDNA-binding transcriptional regulator domain 105 167 IPR009044 GO:0003677|GO:0006355
Prci12g2475 496 Pfam gag-polypeptide of LTR copia-type 266 402 - -
Prci12g2475 496 MobiDBLite consensus disorder prediction 81 98 - -
Prci12g2475 496 Pfam Transcriptional Coactivator p15 (PC4) 106 156 IPR003173 GO:0003677|GO:0006355
Prci12g2475 496 SMART c2hcfinal6 449 465 IPR001878 GO:0003676|GO:0008270
Prci12g2475 496 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2475 Prci-Chr12 42423246 42426969 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Prci12g2475 Retrotran_gag_2 1.2e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2475 - - qsa:O6P43_017796 593.578