Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2474 ATGGAATCCGAAACACGACGGAAAATCGAGGAAACGGTGCTGGATGTGCTGAAGAATTCTAACGTTGATGAAGCGACTGAGTTCACAGTCCGACTCGCGGCCTCGGAGCGGCTCGGAATCGATCTCTGTGTCTCGGAGCACAAGCTGATGGTTAGAGGCATTGTGGAGTCGTATCTGCTCGCTATCGCGGAGGAAGAAGGTGGGAGGGTCCCCGCGTCTGAGCCAAGTGCTCCACAAGAGACGAGAGAGGTGATGCAGGATGAGCAGGAGGCGAAGCCAAACAAGGAGGTTAAGGAGGACTCCGAGCGCATAATTTGCCAGTTATCAAACAAGAGGAATGTGGTGGTTCATGATTTCAGAGGGAAAAGGTTGGTCTCAATTAGGGATTATTATCAGAAAGATGGAAAACAATTTCCTTCAGCTAAAGGGATAAGTTTGTCTACTGATCAATGGTCTGTCTTCAAAAAAAGTGTCCCTGCTATAGAGGAAGCTATTACAAAGATGGGATCTGAGGTTTATGGAAAGCAAAATGGAGATGTGCCGAAACCAAATCTTGATGCTCCTCCTCTTGATCTGGTCTCTGCTGCTTCTCCTCCTGAACCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCATTTATGGGTTCAGCAGATGGAATCACTCTTGAAGCAACTAAAGATTGCGTATGTGCTCACTGAACTATGCCCAAACGCTACACCAGGACCACATGCAAGCGCTGTAGAAGTTGCTGAAGCCAGGGCAGCAGAGAAGAGGTGGGTGAGTGATGATTTCATGTGTCGTCGCAACATCTTGTGCTATTTATCTGATCATCTGTTTAATCAGTATACAAATAGAAAAATGACTGCTAAAGAACTATGGGAGGAGTTAAGACAAGTTTATTTGTATGAGGAATTCGGAACAAAGAGATCACAAGTGAAAAAGTACATTGAATTTAAGTTCGTTGGGGAAAAATCCATACTTGAGCAAGTCCTAGAATTAAATACCATTGCAGACTCTATTGTCTCTGCTGGAATGATGATTGACGAAAACTTCCATGTCAGTGTCCTTATCTCCAAGCTTCCTCCATCTTGGAAGGATGTTTGCATCAAGCTAATGTGCGAAGAGTATCTTCCATTTTGGATGTTAATGGAACGTCTGAGAGTGGAGGAAGAATCTCGCAATCAAGTCAAACAAGGGGATGAACCTTCGAGTAATGACAGAGGCTATCATGAGGCCAGAAAATTTGTTCAAAGATGGGCAGATATAAAGCCTTCAAGTATGTATGGTCAGAGGAATAGGCTAGACATGAATGGCAGGAGTATAGTCTGTTATGTCTGTGGCAAGAAAGGGCATCTTTCCAGAAACTGCTGGAGACGATTTGACAGTCAAGCTAGAGAAAAACGAATTGAAGAAAATGGGCCCTCTGCACCTGTAATTGCACAGGCTAACATGGTCGGTGTCTCTGAGTAG 1479 0.4442 MESETRRKIEETVLDVLKNSNVDEATEFTVRLAASERLGIDLCVSEHKLMVRGIVESYLLAIAEEEGGRVPASEPSAPQETREVMQDEQEAKPNKEVKEDSERIICQLSNKRNVVVHDFRGKRLVSIRDYYQKDGKQFPSAKGISLSTDQWSVFKKSVPAIEEAITKMGSEVYGKQNGDVPKPNLDAPPLDLVSAASPPEPVPIEISRFDGKNYHLWVQQMESLLKQLKIAYVLTELCPNATPGPHASAVEVAEARAAEKRWVSDDFMCRRNILCYLSDHLFNQYTNRKMTAKELWEELRQVYLYEEFGTKRSQVKKYIEFKFVGEKSILEQVLELNTIADSIVSAGMMIDENFHVSVLISKLPPSWKDVCIKLMCEEYLPFWMLMERLRVEEESRNQVKQGDEPSSNDRGYHEARKFVQRWADIKPSSMYGQRNRLDMNGRSIVCYVCGKKGHLSRNCWRRFDSQAREKRIEENGPSAPVIAQANMVGVSE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2474 492 Pfam DEK C terminal domain 5 59 IPR014876 -
Prci12g2474 492 FunFam RNA polymerase II transcriptional coactivator KELP 97 169 - -
Prci12g2474 492 SUPERFAMILY Retrovirus zinc finger-like domains 436 462 IPR036875 GO:0003676|GO:0008270
Prci12g2474 492 SMART c2hcfinal6 445 461 IPR001878 GO:0003676|GO:0008270
Prci12g2474 492 Gene3D - 390 475 - -
Prci12g2474 492 Pfam Transcriptional Coactivator p15 (PC4) 106 156 IPR003173 GO:0003677|GO:0006355
Prci12g2474 492 Gene3D Transcriptional Coactivator Pc4; Chain A 95 173 IPR009044 GO:0003677|GO:0006355
Prci12g2474 492 Pfam Zinc knuckle 445 459 IPR001878 GO:0003676|GO:0008270
Prci12g2474 492 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 170 IPR045125 GO:0003713|GO:0060261
Prci12g2474 492 MobiDBLite consensus disorder prediction 67 98 - -
Prci12g2474 492 SUPERFAMILY ssDNA-binding transcriptional regulator domain 105 167 IPR009044 GO:0003677|GO:0006355
Prci12g2474 492 MobiDBLite consensus disorder prediction 81 98 - -
Prci12g2474 492 Pfam gag-polypeptide of LTR copia-type 262 398 - -
Prci12g2474 492 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Prci12g2474 492 ProSiteProfiles Zinc finger CCHC-type profile. 446 459 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2474 Prci-Chr12 42423246 42426969 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Prci12g2474 Retrotran_gag_2 1.2e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2474 - - qsa:O6P43_017796 585.104