Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2472 ATGAAGCTTGAGTTGGGTTTAGGAGGCGTGTTGTGGAATGATGAAGAAAAAGCCATGGTTGCATCGGTTCTGGGAAATCGAGCTTTTGAATACTTGATTACGAACCCTGTTGCGAACGACAATCTGTTAATGACAGTCGGAAGCGACGAAAGTTTGCAGAACAAGCTTTCGGATCTCGTGGACCGTCCAAACTTATCGAATTTCAGCTGGAACTACGTTATTTTCTGGCAAGTATCACAGTCGAAGAAATCTGGGGATTGGATTTTGGGTTGGGGAGATGGATGTTGCAGAGAACCCAAGGGAGAAGAAGAAGAAGAAGTTGGAGTTAGAGGGCTTCTTACTCTTTGCCTGGAAAAGGATGAGATGCAGCAGAGGATGAGGAAAGGGGTGCTTCAGAAGCTTCACATGACATTTGGGGGTTCAGATGAAGACAATTATGCCTTTGGATTAGACAGGGTTACTGATACAGAAATGTTCTTTCTAGCTTCCATGTACTTCTCCTTCCCTCGTGGCCATGGCGGGCCTGGTAAATGCCTTGCTTCCGGGAAGCATGTATGGTGCTCTGATGCCCTTACCTCTGATTATTGTGTGAGATCTGTTTTGGCAAAATCAGCTGGAATTCAGACCATAGTTTTAGTCCCTACTGACATAGGAGTGGTGGAATTGGGTTCTGTGAGGACGGTAGGAGAGAGCTTAGAATTGTTGCAGGTGATTAAATCAGAGTTTTCTACACAATTGTCAATCCCTAGGGTTTCCCCGTTTTCACCATTGCCTGTTGTGGTGAATGAGAAGAGAGATGAAAATGGTATCTTTTCTGGCTTGCCTGTAGGGGATAAGGTGGAGGGAGTTCCGATGATTTTTGGGCAGGATTTGAACTCAGGAAGCTCTGGTCGTCCCCATTTTAGGGAGAAGCTTGCTGTGAGGAAAATGGAGGAGAGGCCTTGGGCAGGTCATATCCAGCCCAATGGCAATAATATTAGCTTTCCAAGTGCACGGAATGGTATTCATGGCTCGAGTTGGGCTGCTAGTCAAGGTGGGAAACAGGCAACCCCTACTGAGATCTATCCTCCGAGATCCTCAGGTTGCAATGTGGCGGAAGGAGTTAACCAGTTTAGGCAAGACTTGCGGCTTAGCAACTACCAACCACAAAGGCAGGTGCAAATGCAAATTGATTTCTCTGGAGCCACTTCAAGGCCTTCTGTGAGACCGATCAATGCTGAACCAGAGCTATCTGATGTTGAAGCTTCATGCAAAGAAGAGCAGCTGGGCGCAACAGATGAAAGGAGGCCGAGGAAACGGGGTAGAAAGCCTGCCAATGGCAGGGAGGAACCCTTAAATCATGTGGAAGCAGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGATTCTATGCTCTAAGGTCTGTCGTACCCAACATATCCAAGATGGACAAGGCTTCTTTGCTGGGAGACGCCATTGCTTATATCCATGAGCTTCAAGCAAAACTCAAGATCATGGAATCTGAGAGAGAGAGATTTGGAAGCACTTCAAGGGATGTATCAGCATCAGTGGCTGATCCCAAAGTGGAAAATCACAACCAAGCTACCGATGTCGATATTCAAGCTACCCAGAATGAGGTGATAGTACGGGTGAGCAGCCCTCTCAATGCTCATCCTATTGCAAGGGTTATCCAAAAGTTCAAAGATGCACAAATCAATGTCGTTGAGTCGAAATTTGCAACTGCAAATGACACCGTCTTCCATTCCTTTGTAATCAAGTCTCAAGGATCCGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCTTGA 1809 0.4655 MKLELGLGGVLWNDEEKAMVASVLGNRAFEYLITNPVANDNLLMTVGSDESLQNKLSDLVDRPNLSNFSWNYVIFWQVSQSKKSGDWILGWGDGCCREPKGEEEEEVGVRGLLTLCLEKDEMQQRMRKGVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGKHVWCSDALTSDYCVRSVLAKSAGIQTIVLVPTDIGVVELGSVRTVGESLELLQVIKSEFSTQLSIPRVSPFSPLPVVVNEKRDENGIFSGLPVGDKVEGVPMIFGQDLNSGSSGRPHFREKLAVRKMEERPWAGHIQPNGNNISFPSARNGIHGSSWAASQGGKQATPTEIYPPRSSGCNVAEGVNQFRQDLRLSNYQPQRQVQMQIDFSGATSRPSVRPINAEPELSDVEASCKEEQLGATDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYIHELQAKLKIMESERERFGSTSRDVSASVADPKVENHNQATDVDIQATQNEVIVRVSSPLNAHPIARVIQKFKDAQINVVESKFATANDTVFHSFVIKSQGSEQLTKEKLIAAFS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2472 602 MobiDBLite consensus disorder prediction 316 360 - -
Prci12g2472 602 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 442 491 IPR011598 GO:0046983
Prci12g2472 602 Pfam Helix-loop-helix DNA-binding domain 446 492 IPR011598 GO:0046983
Prci12g2472 602 MobiDBLite consensus disorder prediction 412 453 - -
Prci12g2472 602 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 242 IPR025610 -
Prci12g2472 602 CDD bHLH_AtAIB_like 439 513 - -
Prci12g2472 602 MobiDBLite consensus disorder prediction 391 453 - -
Prci12g2472 602 FunFam Transcription factor bHLH13 435 509 - -
Prci12g2472 602 MobiDBLite consensus disorder prediction 320 360 - -
Prci12g2472 602 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 506 IPR036638 GO:0046983
Prci12g2472 602 PANTHER MYC 41 600 IPR045084 GO:0003700|GO:0006355
Prci12g2472 602 SMART finulus 448 497 IPR011598 GO:0046983
Prci12g2472 602 Gene3D - 434 520 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2472 Prci-Chr12 42408323 42411194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2472 5 602 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.641 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g2472 bHLH-MYC_N 1.8e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2472 - - qsa:O6P43_017798 851.277