Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2470 ATGGAGCCAACACCTCCCTGCACTCGCGACGATGACCTAACAGCCGCTGCATCCTCCGTCGCCGTTGACACAGTTGACAAGTCTGATAAGTCACGAGTCGGAGGCACGCGCCACCCAGTGTACCGGGGTGTCCGTAAGCGGCGGTGGGGCAAATGGGTGTCGGAAATCCGGGAGCCCCGTAAGAAATCACGCATATGGCTGGGGTCGTTTCCGGTGCCGGAGATGGCAGCAAAGGCTTATGACGTGGCGGCGTACTGCTTGAAAGGCAGGAAAGCACAGCTCAATTTCCCCGACGAGGTGGAGCTCTTGCCGCGGCCATCCACATGTGCCGCCAGAGATATCCAGGAGGCGGCAGCTAAGGCGGCTCATGCAATGAAATCCTCAGCGAAGAAGAATAGCATTATGTCCGACGGCGACGGCGACGGCGACAGCGGGGGCGATGATTTCTGGGGCGAGATTGAATTGCCAGAGCTGATGAACAGCGGGCGTTTCTGGAGTTCTCCGAGCGGGTCATCGTGGGCTCCTTCCGGCGACATCACGGTGTGGCCGGAGATGGAGCTGCTGTCGCAGCAGCAACAATTCATGGCGTGCTTATAA 597 0.593 MEPTPPCTRDDDLTAAASSVAVDTVDKSDKSRVGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVELLPRPSTCAARDIQEAAAKAAHAMKSSAKKNSIMSDGDGDGDSGGDDFWGEIELPELMNSGRFWSSPSGSSWAPSGDITVWPEMELLSQQQQFMACL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2470 198 MobiDBLite consensus disorder prediction 1 37 - -
Prci12g2470 198 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Prci12g2470 198 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Prci12g2470 198 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Prci12g2470 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 158 - -
Prci12g2470 198 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Prci12g2470 198 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Prci12g2470 198 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Prci12g2470 198 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Prci12g2470 198 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Prci12g2470 198 MobiDBLite consensus disorder prediction 125 151 - -
Prci12g2470 198 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2470 Prci-Chr12 42376196 42377038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2470 4 198 AP2-EREBP Transcription Factor Family AT1G01250 58.500 2.54e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g2470 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2470 K09286 - qsa:O6P43_017799 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2470 12 42376196 42377038 Prci12g2470 12 42376196 42377038 ECH