Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2462 ATGGAAATGGAAGTGAAACCCCACCAACCGTGCGCAGCTTGCAAGATGCTTCGCCGGAGATGTGACAGTAAGTGCCTCCTTGCTCCATACTTTCCGGCCGACGAGCTTGACAAGTTCGCCGTTGTTCACAGAGTCTTCGGCGCTAGCAACGTTATCAAGATGATTCAGATGGTGGAGGAGACGAAGAGGGAGGACGCAGTGAAAGCTATAGTGTACGAGGCAATGGCGAGGGTGAGGGATCCAGTGTATGGCAGTGCAGGGGCTATAAAGCAGCTGCAGAAGATGGTGAAGCAGCTGAAGGTGGAGGTGGAGACCATGAAGGCTAGGGTTTCAGAGGTGCGAGAACAAAGAGACGAGTTGCTGATGAATATTGGCCACCATGCGGACTCTCTTCATCATCTTCCTCATCATCATCAGTTTCCCAGCAATGTTGTCCAAGACCCTGTGGCTGTCTTTGATGACTATTACGCTGCTCTCTCGTTAGACCCAATAATGGATCAATTCTCTCTGCAAGGCGACTGGGTCTTGTAG 531 0.5122 MEMEVKPHQPCAACKMLRRRCDSKCLLAPYFPADELDKFAVVHRVFGASNVIKMIQMVEETKREDAVKAIVYEAMARVRDPVYGSAGAIKQLQKMVKQLKVEVETMKARVSEVREQRDELLMNIGHHADSLHHLPHHHQFPSNVVQDPVAVFDDYYAALSLDPIMDQFSLQGDWVL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2462 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 127 - -
Prci12g2462 176 Coils Coil 89 123 - -
Prci12g2462 176 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Prci12g2462 176 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2462 Prci-Chr12 42274756 42275578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2462 10 143 AS2 family AT1G07900 47.761 5.21e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci12g2462 LOB 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2462 - - minc:123216289 187.578