Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2442 ATGATGGCTACATCAGAAGCCGTTTCTCATATTATAAATATTATTGCTGAGTTAGTAGTTTGTGCTAGTGATGTCCTTATGAAGAAGGATAGTTTTAAGGAACTTGCAGCTTACTTGGAAAGTATTGTGCCAATCTTGAAAGAATTGATGACAAAAAAAGTCAGCAATTCTGAGGCGTTTATCAATACCATTGATGTTCTGAATCGTGAAATTAGAGATGCAAAGCAATTGACTCTAGAATGCCGCCAGAGGAGCAAGGTTTACCTCCTAGTGAACTGCATGTCAATCAATAAACGTTTACAGAAGACAATACGTGAGATCAGCTGGGCAATTGGTCTTCTTCCTTTGGCCACATCAGATCTTTCTTCTAGAACAATTGAAGAAATTGGAAAGCTCAGTGAAAATATGCAGCAAGCTGAGTTTAAGGCAACTGTAGCGCAAGAGGAGATTTTGGAGAAAATTGAGTCAGGGATACTGGAAAATAACGTTGATCACTCTTATGCCGATAATTTGTTGATCCACATTGCAGAGGCGGTTGGGGCTACTACTGAGAGGTCAACGTTGAAGAAGGAACTTGTAGAATTCAAGATTGAAATAGAAAATTGCCGCCTTAGGAAAGACCAAGAAGAAGCTATGTATATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCCTCATCACCTAGGGAAAGGGAATTAAAGTACCTTTCCAAGCGCAACTCTTTGGGTAGTCAAACATTGGAGCCTCTCCAATCATTTCATTGCCCCATAACCCAGGAAGTTATGGAGGACCCTGTAGAAACTTCTACAGGGAAGACATTTGAGAGAAGTGCCATAGAAAAATGGTTTGCTGAAGGAAATAAGCTATGTCCTCTGACGATGACTCCTTTAGACACATCAATTTTACGATCTAACAGAATCTTGAAACAGTCAATAAAAGAATGGAAGGATAGAAATACGATGATAACAATTGTTTTGACTAAAGAAAAACTCCATTCTAAAGATGATGATGAAGTGCTACATTGTCTGGGAACTCTGCAGGATCTGTGTGAACAAAGTGGTCAACACAGGGAATGGCTGATGCTGGAGAATTACATACCAGTTCTCATCCAGATTCTTGGTGCTAAAAACCATGATGTAAGGAACCGTGCGCTAGCCATCCTTAACATTTTGGCAAAGGATAATGATGATGCTAAGGAAAGAATTGCCAATATTGATAATGCAGTCGTATCTATTGTTCATTCACTTGGACGCCGGGCGGGGGAAAGGAAGCTGGCAGTGGCATTACTGCTGGAATTATCCAAATATGATTTGGTGCGAGAAGAAATTGGAAAGGTTCAAGGTTGCATACTTCTATTGGTGACTATGTCCAGCAGTGATGATAATGAAGCTGCAGGAAATGCGAAGGAGCTACTGGAGAATCTTTCATACTCTAATAACAATGTTTTAAAGATGGCAAGGGCAAATTATTTCCAGCATCTTCTGCACCGTCTTTCCACTGGACCAGATGACGTGAAAATGATTATGGCAACAGCTCTAGCGGAAATGGAGTTGACCAACCTCAATAAAGCATCTTTGTTTGAAGGTGGTGTACTGGGTCCTCTTCTCCATTTGGTCTCACATGCTGATATTCTAGTGAAAACAGTGGCCATTAGGTCTTTACGGAACCTATCCAGTTTAAAGAAAAATGGACTGGAGATGATTCGACAAGGTGCAGTACGCCCTATATTTGACCTTCTGTTCCAGCCTGGCTTGCTATCCTTAAGTTTAAAGGAGCACATAACAGCCGTAATTATGCAACTTGCGGCTTCAACCATCTCTACAGATGGCCAGGCACCGGATTTGTTGTTAGAATCTGATGAAGATATTTTAAAACTCTTCTCTTTAATTAGTTTCACAAGGTCCGATGTGCAGCAGAACATTTTACAAACCTTCTATGCATTGTGTCAGTCCCCGTCAGCCTCATTTATCAGGAACAAGCTAAGACAGGGTTCAGTTTTTGAAGTTTTGGTCCAGCTTTGTGAGCAGGAAAATCTAAACCTACGGGCGAGTGCTGTAAAGCTGTTTGCTTGCTTAGTATGCGATGAAGCCAGGATCCTGGAAAACGTAAATCAGAAATGCGTTGAAGCTATGCTCCAGATCCTGAGAACTTCTTCAGATGAAGAGGAAATTTCTTCTGCTCTGGGCATAGTACGCTATCTTCCAAAAGTTCACCAGATCACGCAGTGGCTTCTGGATGCTGGTGCACTTCCAATCATAAATAATCATCTCCAAGATCGGAAGGACAAAGATTGCCAAAAGAGCAAGTTACTAGAGAATGCCATTGGTGCCTTGAGTCATTTCACTGTTTCAACAAACCTAGAATGGCAAAAGAGTGCTGCTGAAATTGGTGTCATATCTGTTCTAGTGCAGTTGCTTGAATGTGGAACCACTTCAACAAAACAACAAGCGGCATCATCTCTAGCTCAATTTTCAAAGAGCTCACTTGAGCTGAGCAGGCCAGTATCCAAGCCCAAGGGCCTTTGGTGCTTCTCAGCTCCAACACGAATCAGCTGCTTGGTTCATGGAGGAATGTGTACTGTCAAGTCATCATTTTGCCTTGTTGAGGCTGATGCAGTGAGGCCATTAGTGAGGACACTCGGAGAATCTGATCCAGGAGTTTCTGAGGCTTCTTTAGATGCTCTATTGACATTAGTTGAAGGGGAAAGACTACAAAATGGTAGTAAAGTGCTCGCAGTAGCAAATGCCATACCAGTAATAATAAAATGTCTAAATTCTCCATCCCCTGGACTACAGGAGAAATCTCTACATGCTTTGGAAAGGATTTTTCGGCTATGGGAGTTCAAACAATTGTATGGAGCCTCAGCTCATATGCCTCTGGTTGATTTAACTCAACGAGGTACTGATCGTGTGAGATCTCTGGCAGCTAGAGTATTGGCACATTTAAATGTGCTCCATTATCAGTCTTCTTATTTCTAA 2985 0.4161 MMATSEAVSHIINIIAELVVCASDVLMKKDSFKELAAYLESIVPILKELMTKKVSNSEAFINTIDVLNREIRDAKQLTLECRQRSKVYLLVNCMSINKRLQKTIREISWAIGLLPLATSDLSSRTIEEIGKLSENMQQAEFKATVAQEEILEKIESGILENNVDHSYADNLLIHIAEAVGATTERSTLKKELVEFKIEIENCRLRKDQEEAMYMDQIIALLERADAASSPRERELKYLSKRNSLGSQTLEPLQSFHCPITQEVMEDPVETSTGKTFERSAIEKWFAEGNKLCPLTMTPLDTSILRSNRILKQSIKEWKDRNTMITIVLTKEKLHSKDDDEVLHCLGTLQDLCEQSGQHREWLMLENYIPVLIQILGAKNHDVRNRALAILNILAKDNDDAKERIANIDNAVVSIVHSLGRRAGERKLAVALLLELSKYDLVREEIGKVQGCILLLVTMSSSDDNEAAGNAKELLENLSYSNNNVLKMARANYFQHLLHRLSTGPDDVKMIMATALAEMELTNLNKASLFEGGVLGPLLHLVSHADILVKTVAIRSLRNLSSLKKNGLEMIRQGAVRPIFDLLFQPGLLSLSLKEHITAVIMQLAASTISTDGQAPDLLLESDEDILKLFSLISFTRSDVQQNILQTFYALCQSPSASFIRNKLRQGSVFEVLVQLCEQENLNLRASAVKLFACLVCDEARILENVNQKCVEAMLQILRTSSDEEEISSALGIVRYLPKVHQITQWLLDAGALPIINNHLQDRKDKDCQKSKLLENAIGALSHFTVSTNLEWQKSAAEIGVISVLVQLLECGTTSTKQQAASSLAQFSKSSLELSRPVSKPKGLWCFSAPTRISCLVHGGMCTVKSSFCLVEADAVRPLVRTLGESDPGVSEASLDALLTLVEGERLQNGSKVLAVANAIPVIIKCLNSPSPGLQEKSLHALERIFRLWEFKQLYGASAHMPLVDLTQRGTDRVRSLAARVLAHLNVLHYQSSYF 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2442 994 SUPERFAMILY RING/U-box 241 322 - -
Prci12g2442 994 Coils Coil 129 149 - -
Prci12g2442 994 SUPERFAMILY ARM repeat 318 984 IPR016024 -
Prci12g2442 994 CDD RING-Ubox_PUB 255 304 IPR045210 -
Prci12g2442 994 Coils Coil 390 410 - -
Prci12g2442 994 Gene3D - 328 422 IPR011989 -
Prci12g2442 994 Gene3D - 423 832 IPR011989 -
Prci12g2442 994 Pfam U-box domain 255 321 IPR003613 GO:0004842|GO:0016567
Prci12g2442 994 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 327 IPR013083 -
Prci12g2442 994 ProSiteProfiles U-box domain profile. 250 324 IPR003613 GO:0004842|GO:0016567
Prci12g2442 994 Gene3D - 1 118 IPR036537 GO:0007166
Prci12g2442 994 Gene3D - 852 990 IPR011989 -
Prci12g2442 994 SMART Ubox_2 254 317 IPR003613 GO:0004842|GO:0016567
Prci12g2442 994 SMART arm_5 562 605 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 355 395 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 862 902 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 906 946 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 739 785 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 521 561 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 696 738 IPR000225 GO:0005515
Prci12g2442 994 SMART arm_5 788 828 IPR000225 GO:0005515
Prci12g2442 994 Coils Coil 185 205 - -
Prci12g2442 994 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2442 Prci-Chr12 42095391 42104373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2442 253 994 U-box Gene Family AT1G20780 27.898 4.96e-61 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2442 - - qsa:O6P43_027410 1330.85