Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2434 ATGGCACACACTCCCAGTCCCAGAGACATTCCCTTCCACCTATACTCAACCTCGAGTTCTTTATTTGGCCCCAAAAAAAAAAAAAAAGAAGACAAAACCAAAAACAAAACCTCGAGTTCTTTAAACACCCAGGAAGAAGTCACTGTAGATCCCCACAAGATGTTTGATCAGCATGCTATGGAATATTGTCATTCAGCAGCAGCTGCGGAAGCAGAAGCCTATAGCAGCACAGATCCATCAGGAGGAGGAGTACTCACGAGGAAGAGGAAGGGAAGCAAAATCCAGAGAAGGTTCAGTGATGACCAGATCAGATCGTTGGAATCCATGTTTGAGACAGAGTCAAGGCTTGAGCCGAGGAAGAAGGTGCAGCTGGCAAGAGAGCTCGGGTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAGAACAAGAGGGCGAGATGGAAGTCCAAGCAGATTGAAAGAGACTACAGCATACTAAGAGCTAGTTATAGCAGCTTGGCTTCCAGGTTCGAAGCTCTGAAGAAGGAGAAGGAGGCATTGCTAATTCAGTTGCAGAAGCTGAATGGTCAAATACAGAAGCCAAACGAGCAAGCTCAGTGCTGCACGCAAGCCAAACCAGCAAACAGCATGGACAGTGTATCAGAAAATGGAGACACCGCTAGAGCAAAACCTGAGGAAAATCCGAGCTCAACAATGGAGCGATCAGAGCACGTACTGGGTGTTCTCTCAGATGATGACAGCAGCATAAAGGCAGAATACTTTGGCCTTGAAGATCAACCTACTCTTCTGAATTTTGTCGAGCAAGCAGATGATTCCCTGACTTCAGCAGAAGATTGGCGTTCTTTTGATTCAGATGAACTCTTAGACCAGTCTCCTGCTGGTTACCAGTGGTGGGACTTCTGGTCCTGA 906 0.4691 MAHTPSPRDIPFHLYSTSSSLFGPKKKKKEDKTKNKTSSSLNTQEEVTVDPHKMFDQHAMEYCHSAAAAEAEAYSSTDPSGGGVLTRKRKGSKIQRRFSDDQIRSLESMFETESRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRASYSSLASRFEALKKEKEALLIQLQKLNGQIQKPNEQAQCCTQAKPANSMDSVSENGDTARAKPEENPSSTMERSEHVLGVLSDDDSSIKAEYFGLEDQPTLLNFVEQADDSLTSAEDWRSFDSDELLDQSPAGYQWWDFWS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2434 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 88 232 IPR045224 GO:0003700
Prci12g2434 301 Pfam Homeodomain 96 147 IPR001356 GO:0003677
Prci12g2434 301 SMART HOX_1 92 153 IPR001356 GO:0003677
Prci12g2434 301 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Prci12g2434 301 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Prci12g2434 301 CDD homeodomain 93 150 IPR001356 GO:0003677
Prci12g2434 301 MobiDBLite consensus disorder prediction 203 233 - -
Prci12g2434 301 MobiDBLite consensus disorder prediction 217 233 - -
Prci12g2434 301 FunFam Homeobox-leucine zipper protein ATHB-7 79 149 - -
Prci12g2434 301 SUPERFAMILY Homeodomain-like 76 150 IPR009057 -
Prci12g2434 301 MobiDBLite consensus disorder prediction 68 97 - -
Prci12g2434 301 Gene3D - 80 152 - -
Prci12g2434 301 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Prci12g2434 301 MobiDBLite consensus disorder prediction 1 50 - -
Prci12g2434 301 Coils Coil 169 189 - -
Prci12g2434 301 Pfam Homeobox associated leucine zipper 149 190 IPR003106 GO:0006355|GO:0043565
Prci12g2434 301 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2434 Prci-Chr12 41985855 41987446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2434 95 301 Homeobox Transcription Factor Family AT2G46680 56.696 7.83e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci12g2434 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2434 K09338 - qsa:O6P43_027419 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2434 12 41985855 41987446 Prci12g2434 12 41985855 41987446 ECH